Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AEE entry

There are 2 chains in PDB entry 5AEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12ILE 678
B
 ASP 10SER 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5AEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
161 172Right-handed alpha
Helix 2
2
A
231 244Right-handed alpha
Helix 3
3
A
250 255Right-handed 310
Helix 4
4
A
264 278Right-handed alpha
Helix 5
5
A
288 291Right-handed 310
Helix 6
6
A
315 326Right-handed alpha
Helix 7
7
A
342 352Right-handed alpha
Helix 8
8
A
379 394Right-handed alpha
Helix 9
9
A
421 444Right-handed alpha
Helix 10
10
A
460 465Right-handed alpha
Helix 11
11
A
482 484Right-handed 310
Helix 12
12
A
485 496Right-handed alpha
Helix 13
13
A
517 529Right-handed alpha
Helix 14
14
A
541 545Right-handed 310
Helix 15
15
A
551 568Right-handed alpha
Helix 16
16
A
568 583Right-handed alpha
Helix 17
17
A
589 593Right-handed 310
Helix 18
18
A
597 603Right-handed 310
Helix 19
19
A
668 674Right-handed alpha
Helix 20
20
A
675 678Right-handed 310
Helix 21
21
B
161 172Right-handed alpha
Helix 22
22
B
231 244Right-handed alpha
Helix 23
23
B
250 255Right-handed 310
Helix 24
24
B
264 278Right-handed alpha
Helix 25
25
B
288 291Right-handed 310
Helix 26
26
B
315 326Right-handed alpha
Helix 27
27
B
342 352Right-handed alpha
Helix 28
28
B
379 394Right-handed alpha
Helix 29
29
B
421 444Right-handed alpha
Helix 30
30
B
460 465Right-handed alpha
Helix 31
31
B
482 484Right-handed 310
Helix 32
32
B
485 496Right-handed alpha
Helix 33
33
B
517 529Right-handed alpha
Helix 34
34
B
541 545Right-handed 310
Helix 35
35
B
551 568Right-handed alpha
Helix 36
36
B
568 583Right-handed alpha
Helix 37
37
B
589 593Right-handed 310
Helix 38
38
B
597 603Right-handed 310
Helix 39
39
B
668 674Right-handed alpha
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There are 18 sheets in PDB entry 5AEE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
27 32anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 66first strand
Strand 2
A
39 51anti-parallel
Strand 3
A
116 122anti-parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
203 209anti-parallel
Strand 6
A
145 148anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
78 84anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
103 109anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
193 197anti-parallel
Strand 7
A
183 189anti-parallel
Strand 8
A
129 133anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 454first strand
Strand 2
A
401 404parallel
Strand 3
A
329 334parallel
Strand 4
A
282 286parallel
Strand 5
A
257 260parallel
Strand 6
A
534 536parallel
Strand 7
A
504 505parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
300 302anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
371 374anti-parallel
Strand 3
A
365 366anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
501 502parallel
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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 588first strand
Strand 2
A
607 609anti-parallel
Strand 3
A
613 615anti-parallel
Strand 4
A
660 663anti-parallel
Strand 5
A
635 637anti-parallel
Strand 6
A
643 644anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 630first strand
Strand 2
A
647 652anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
20 24anti-parallel
Strand 3
B
27 32anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 66first strand
Strand 2
B
39 51anti-parallel
Strand 3
B
116 122anti-parallel
Strand 4
B
212 217anti-parallel
Strand 5
B
203 209anti-parallel
Strand 6
B
145 148anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 75first strand
Strand 2
B
78 84anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
221 228anti-parallel
Strand 6
B
193 197anti-parallel
Strand 7
B
183 189anti-parallel
Strand 8
B
129 133anti-parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 454first strand
Strand 2
B
401 404parallel
Strand 3
B
329 334parallel
Strand 4
B
282 286parallel
Strand 5
B
257 260parallel
Strand 6
B
534 535parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
300 302anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
371 374anti-parallel
Strand 3
B
364 366anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 469first strand
Strand 2
B
501 502parallel
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There are 6 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 588first strand
Strand 2
B
607 609anti-parallel
Strand 3
B
613 615anti-parallel
Strand 4
B
660 663anti-parallel
Strand 5
B
635 637anti-parallel
Strand 6
B
643 644anti-parallel
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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 630first strand
Strand 2
B
647 652anti-parallel
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