Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AEJ entry

There are 4 chains in PDB entry 5AEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 71ASP 184
B
 GLU 72ASP 184
C
 GLU 72ASP 184
D
 SER 71ASP 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5AEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 87Right-handed alpha
Helix 2
2
B
76 87Right-handed alpha
Helix 3
3
C
76 87Right-handed alpha
Helix 4
4
D
76 87Right-handed alpha
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There are 13 sheets in PDB entry 5AEJ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, AC, CA, CB, CC, A, CD, DB, CE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 103first strand
Strand 2
A
111 131anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 180first strand
Strand 2
A
134 157anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 103first strand
Strand 2
B
111 130anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 180first strand
Strand 2
B
135 157anti-parallel
Strand 3
B
111 130anti-parallel
Strand 4
B
93 103anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 180first strand
Strand 2
B
135 157anti-parallel
Strand 3
B
111 130anti-parallel
Strand 4
A
111 131anti-parallel
Strand 5
A
134 157anti-parallel
Strand 6
D
182 184parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
D
134 157parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 103first strand
Strand 2
C
111 130parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 180first strand
Strand 2
C
135 157anti-parallel
Strand 3
C
111 130anti-parallel
Strand 4
D
111 131anti-parallel
Strand 5
D
134 157anti-parallel
Strand 6
D
165 180parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 180first strand
Strand 2
C
135 157anti-parallel
Strand 3
C
111 130anti-parallel
Strand 4
C
93 103parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 103first strand
Strand 2
D
111 131anti-parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 180first strand
Strand 2
C
135 157anti-parallel
Strand 3
C
111 130anti-parallel
Strand 4
D
111 131anti-parallel
Strand 5
D
93 103anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
165 180first strand
Strand 2
D
134 157parallel
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There are 6 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 180first strand
Strand 2
C
135 157anti-parallel
Strand 3
C
111 130anti-parallel
Strand 4
D
111 131anti-parallel
Strand 5
D
134 157anti-parallel
Strand 6
A
182 184parallel
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