Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AEK entry

There are 24 chains in PDB entry 5AEK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 367	LEU 589
B	GLU 20	GLY 97
C	LEU 366	LEU 589
D	GLU 20	GLY 97
E	LEU 366	LEU 589
F	GLU 20	GLY 97
G	GLU 367	LEU 589
H	TYR 21	GLY 97
I	GLU 367	LEU 589
J	GLU 20	GLY 97
K	GLU 367	LEU 589
L	TYR 21	GLY 97
M	LEU 368	LEU 589
N	GLU 20	GLY 97
O	GLU 367	LEU 589
P	GLU 20	GLY 97
Q	LEU 366	LEU 589
R	GLU 20	GLY 97
S	LEU 366	LEU 589
T	GLU 20	GLY 97
U	GLU 367	LEU 589
V	GLU 20	GLY 97
W	LEU 368	LEU 589
X	GLU 20	GLY 97

There are161 helices in PDB entry 5AEK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	369	381	Right-handed alpha
Helix 2	2	A	399	403	Right-handed alpha
Helix 3	3	A	404	406	Right-handed 310
Helix 4	4	A	413	430	Right-handed alpha
Helix 5	5	A	441	455	Right-handed alpha
Helix 6	6	A	456	459	Right-handed 310
Helix 7	7	A	462	466	Right-handed 310
Helix 8	8	A	501	520	Right-handed alpha
Helix 9	9	A	547	560	Right-handed alpha
Helix 10	10	A	568	570	Right-handed 310
Helix 11	11	A	571	585	Right-handed alpha
Helix 12	12	B	44	56	Right-handed alpha
Helix 13	13	B	76	81	Right-handed alpha
Helix 14	14	C	369	381	Right-handed alpha
Helix 15	15	C	399	404	Right-handed alpha
Helix 16	16	C	413	428	Right-handed alpha
Helix 17	17	C	441	449	Right-handed alpha
Helix 18	18	C	449	455	Right-handed alpha
Helix 19	19	C	456	459	Right-handed 310
Helix 20	20	C	462	466	Right-handed 310
Helix 21	21	C	501	520	Right-handed alpha
Helix 22	22	C	525	529	Right-handed 310
Helix 23	23	C	547	560	Right-handed alpha
Helix 24	24	C	568	570	Right-handed 310
Helix 25	25	C	571	585	Right-handed alpha
Helix 26	26	D	44	54	Right-handed alpha
Helix 27	27	D	58	60	Right-handed 310
Helix 28	28	E	369	381	Right-handed alpha
Helix 29	29	E	399	403	Right-handed alpha
Helix 30	30	E	404	406	Right-handed 310
Helix 31	31	E	413	431	Right-handed alpha
Helix 32	32	E	441	450	Right-handed alpha
Helix 33	33	E	450	455	Right-handed alpha
Helix 34	34	E	456	459	Right-handed 310
Helix 35	35	E	501	521	Right-handed alpha
Helix 36	36	E	535	539	Right-handed 310
Helix 37	37	E	547	561	Right-handed alpha
Helix 38	38	E	568	570	Right-handed 310
Helix 39	39	E	571	586	Right-handed alpha
Helix 40	40	F	44	54	Right-handed alpha
Helix 41	41	F	76	81	Right-handed alpha
Helix 42	42	G	369	381	Right-handed alpha
Helix 43	43	G	399	404	Right-handed alpha
Helix 44	44	G	413	430	Right-handed alpha
Helix 45	45	G	441	450	Right-handed alpha
Helix 46	46	G	451	459	Right-handed 310
Helix 47	47	G	462	466	Right-handed 310
Helix 48	48	G	501	521	Right-handed alpha
Helix 49	49	G	547	560	Right-handed alpha
Helix 50	50	G	568	570	Right-handed 310
Helix 51	51	G	571	586	Right-handed alpha
Helix 52	52	H	44	56	Right-handed alpha
Helix 53	53	H	58	60	Right-handed 310
Helix 54	54	H	76	81	Right-handed alpha
Helix 55	55	I	369	381	Right-handed alpha
Helix 56	56	I	399	404	Right-handed alpha
Helix 57	57	I	412	431	Right-handed alpha
Helix 58	58	I	441	450	Right-handed alpha
Helix 59	59	I	450	455	Right-handed alpha
Helix 60	60	I	456	459	Right-handed 310
Helix 61	61	I	462	466	Right-handed 310
Helix 62	62	I	487	489	Right-handed 310
Helix 63	63	I	502	521	Right-handed alpha
Helix 64	64	I	525	529	Right-handed 310
Helix 65	65	I	549	560	Right-handed alpha
Helix 66	66	I	568	570	Right-handed 310
Helix 67	67	I	571	586	Right-handed alpha
Helix 68	68	J	44	56	Right-handed alpha
Helix 69	69	J	76	81	Right-handed alpha
Helix 70	70	K	369	381	Right-handed alpha
Helix 71	71	K	399	404	Right-handed alpha
Helix 72	72	K	412	430	Right-handed alpha
Helix 73	73	K	441	455	Right-handed alpha
Helix 74	74	K	456	459	Right-handed 310
Helix 75	75	K	462	466	Right-handed 310
Helix 76	76	K	501	521	Right-handed alpha
Helix 77	77	K	525	529	Right-handed 310
Helix 78	78	K	547	560	Right-handed alpha
Helix 79	79	K	568	570	Right-handed 310
Helix 80	80	K	571	586	Right-handed alpha
Helix 81	81	L	44	55	Right-handed alpha
Helix 82	82	L	58	60	Right-handed 310
Helix 83	83	L	76	81	Right-handed alpha
Helix 84	84	M	371	380	Right-handed alpha
Helix 85	85	M	399	403	Right-handed alpha
Helix 86	86	M	404	406	Right-handed 310
Helix 87	87	M	413	431	Right-handed alpha
Helix 88	88	M	441	450	Right-handed alpha
Helix 89	89	M	450	455	Right-handed alpha
Helix 90	90	M	456	458	Right-handed 310
Helix 91	91	M	501	521	Right-handed alpha
Helix 92	92	M	547	560	Right-handed alpha
Helix 93	93	M	568	570	Right-handed 310
Helix 94	94	M	571	586	Right-handed alpha
Helix 95	95	N	44	54	Right-handed alpha
Helix 96	96	N	58	60	Right-handed 310
Helix 97	97	N	76	81	Right-handed alpha
Helix 98	98	O	369	381	Right-handed alpha
Helix 99	99	O	398	403	Right-handed alpha
Helix 100	100	O	413	430	Right-handed alpha
Helix 101	101	O	441	450	Right-handed alpha
Helix 102	102	O	450	455	Right-handed alpha
Helix 103	103	O	503	521	Right-handed alpha
Helix 104	104	O	547	560	Right-handed alpha
Helix 105	105	O	571	586	Right-handed alpha
Helix 106	106	P	44	56	Right-handed alpha
Helix 107	107	P	76	81	Right-handed alpha
Helix 108	108	Q	371	378	Right-handed alpha
Helix 109	109	Q	399	403	Right-handed alpha
Helix 110	110	Q	412	430	Right-handed alpha
Helix 111	111	Q	441	449	Right-handed alpha
Helix 112	112	Q	450	459	Right-handed 310
Helix 113	113	Q	462	466	Right-handed 310
Helix 114	114	Q	501	510	Right-handed alpha
Helix 115	115	Q	515	520	Right-handed alpha
Helix 116	116	Q	547	560	Right-handed alpha
Helix 117	117	Q	571	585	Right-handed alpha
Helix 118	118	R	44	54	Right-handed alpha
Helix 119	119	R	58	60	Right-handed 310
Helix 120	120	R	76	81	Right-handed alpha
Helix 121	121	S	369	381	Right-handed alpha
Helix 122	122	S	399	403	Right-handed alpha
Helix 123	123	S	404	406	Right-handed 310
Helix 124	124	S	413	430	Right-handed alpha
Helix 125	125	S	441	455	Right-handed alpha
Helix 126	126	S	462	466	Right-handed 310
Helix 127	127	S	501	520	Right-handed alpha
Helix 128	128	S	547	560	Right-handed alpha
Helix 129	129	S	568	570	Right-handed 310
Helix 130	130	S	571	586	Right-handed alpha
Helix 131	131	T	44	54	Right-handed alpha
Helix 132	132	T	58	60	Right-handed 310
Helix 133	133	T	76	81	Right-handed alpha
Helix 134	134	U	369	381	Right-handed alpha
Helix 135	135	U	399	403	Right-handed alpha
Helix 136	136	U	404	406	Right-handed 310
Helix 137	137	U	413	430	Right-handed alpha
Helix 138	138	U	441	449	Right-handed alpha
Helix 139	139	U	450	455	Right-handed alpha
Helix 140	140	U	456	459	Right-handed 310
Helix 141	141	U	462	466	Right-handed 310
Helix 142	142	U	501	521	Right-handed alpha
Helix 143	143	U	547	560	Right-handed alpha
Helix 144	144	U	568	570	Right-handed 310
Helix 145	145	U	571	586	Right-handed alpha
Helix 146	146	V	44	55	Right-handed alpha
Helix 147	147	V	58	60	Right-handed 310
Helix 148	148	V	76	81	Right-handed alpha
Helix 149	149	W	369	381	Right-handed alpha
Helix 150	150	W	399	403	Right-handed alpha
Helix 151	151	W	404	406	Right-handed 310
Helix 152	152	W	413	431	Right-handed alpha
Helix 153	153	W	441	450	Right-handed alpha
Helix 154	154	W	454	459	Right-handed 310
Helix 155	155	W	501	520	Right-handed alpha
Helix 156	156	W	548	560	Right-handed alpha
Helix 157	157	W	568	570	Right-handed 310
Helix 158	158	W	571	585	Right-handed alpha
Helix 159	159	X	43	53	Right-handed alpha
Helix 160	160	X	54	56	Right-handed 310
Helix 161	161	X	76	81	Right-handed alpha

There are 45 sheets in PDB entry 5AEK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, A, EA, EB, EC, FA, GA, GB, GC, HA, IA, IB, JA, KA, KB, LA, MA, MB, MC, NA, OA, OB, OC, PA, QA, QB, RA, SA, SB, SC, TA, UA, UB, UC, VA, WA, WB, WC, XA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	392	first strand
Strand 2	A	395	398	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	B	95	96	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	468	473	parallel
Strand 3	A	480	485	anti-parallel
Strand 4	A	490	494	anti-parallel
Strand 5	A	530	533	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	B	86	92	parallel
Strand 4	B	62	66	anti-parallel
Strand 5	B	69	70	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	391	first strand
Strand 2	C	396	398	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	D	95	96	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	468	475	parallel
Strand 3	C	478	485	anti-parallel
Strand 4	C	490	493	anti-parallel
Strand 5	C	530	533	parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	24	28	anti-parallel
Strand 3	D	88	92	parallel
Strand 4	D	62	66	anti-parallel
Strand 5	D	69	70	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	388	390	first strand
Strand 2	E	397	398	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	412	first strand
Strand 2	F	95	96	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	435	437	first strand
Strand 2	E	468	475	parallel
Strand 3	E	478	483	anti-parallel
Strand 4	E	493	494	anti-parallel

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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	F	87	92	parallel
Strand 4	F	62	66	anti-parallel
Strand 5	F	69	70	anti-parallel

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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	388	392	first strand
Strand 2	G	395	398	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	411	412	first strand
Strand 2	H	95	96	anti-parallel

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There are 5 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	435	437	first strand
Strand 2	G	468	475	parallel
Strand 3	G	478	485	anti-parallel
Strand 4	G	490	494	anti-parallel
Strand 5	G	530	533	parallel

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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	36	first strand
Strand 2	H	24	26	anti-parallel
Strand 3	H	86	92	parallel
Strand 4	H	62	66	anti-parallel
Strand 5	H	69	70	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	388	392	first strand
Strand 2	I	395	398	anti-parallel

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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	435	437	first strand
Strand 2	I	468	475	parallel
Strand 3	I	478	485	anti-parallel
Strand 4	I	490	494	anti-parallel

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There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	36	first strand
Strand 2	J	24	28	anti-parallel
Strand 3	J	86	92	parallel
Strand 4	J	62	66	anti-parallel
Strand 5	J	69	70	anti-parallel

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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	388	392	first strand
Strand 2	K	395	398	anti-parallel

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There are 5 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	435	437	first strand
Strand 2	K	468	475	parallel
Strand 3	K	478	485	anti-parallel
Strand 4	K	490	494	anti-parallel
Strand 5	K	530	533	parallel

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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	38	first strand
Strand 2	L	22	28	anti-parallel
Strand 3	L	86	92	parallel
Strand 4	L	62	66	anti-parallel
Strand 5	L	69	70	anti-parallel

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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	388	392	first strand
Strand 2	M	395	398	anti-parallel

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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	411	412	first strand
Strand 2	N	95	96	anti-parallel

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There are 5 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	435	437	first strand
Strand 2	M	468	475	parallel
Strand 3	M	478	485	anti-parallel
Strand 4	M	490	494	anti-parallel
Strand 5	M	530	533	parallel

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There are 5 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	34	38	first strand
Strand 2	N	22	28	anti-parallel
Strand 3	N	86	92	parallel
Strand 4	N	62	66	anti-parallel
Strand 5	N	69	70	anti-parallel

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There are 2 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	390	392	first strand
Strand 2	O	395	397	anti-parallel

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There are 2 strands in OB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	411	412	first strand
Strand 2	P	95	96	anti-parallel

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There are 5 strands in OC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	435	437	first strand
Strand 2	O	468	475	parallel
Strand 3	O	478	485	anti-parallel
Strand 4	O	490	495	anti-parallel
Strand 5	O	530	533	parallel

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There are 4 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	25	28	first strand
Strand 2	P	87	92	parallel
Strand 3	P	62	66	anti-parallel
Strand 4	P	69	70	anti-parallel

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There are 2 strands in QA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	388	392	first strand
Strand 2	Q	395	398	anti-parallel

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There are 4 strands in QB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	435	437	first strand
Strand 2	Q	468	475	parallel
Strand 3	Q	478	485	anti-parallel
Strand 4	Q	490	492	anti-parallel

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There are 4 strands in RA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	24	26	first strand
Strand 2	R	86	92	parallel
Strand 3	R	62	66	anti-parallel
Strand 4	R	69	70	anti-parallel

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There are 2 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	388	392	first strand
Strand 2	S	395	398	anti-parallel

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There are 2 strands in SB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	411	412	first strand
Strand 2	T	95	96	anti-parallel

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There are 4 strands in SC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	435	437	first strand
Strand 2	S	468	473	parallel
Strand 3	S	480	485	anti-parallel
Strand 4	S	491	494	anti-parallel

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There are 5 strands in TA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	34	36	first strand
Strand 2	T	24	28	anti-parallel
Strand 3	T	86	92	parallel
Strand 4	T	62	66	anti-parallel
Strand 5	T	69	70	anti-parallel

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There are 2 strands in UA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	388	392	first strand
Strand 2	U	395	398	anti-parallel

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There are 2 strands in UB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	411	412	first strand
Strand 2	V	95	96	anti-parallel

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There are 5 strands in UC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	435	437	first strand
Strand 2	U	468	475	parallel
Strand 3	U	478	485	anti-parallel
Strand 4	U	490	494	anti-parallel
Strand 5	U	530	533	parallel

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There are 5 strands in VA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	33	37	first strand
Strand 2	V	23	28	anti-parallel
Strand 3	V	86	92	parallel
Strand 4	V	62	66	anti-parallel
Strand 5	V	69	70	anti-parallel

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There are 2 strands in WA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	388	392	first strand
Strand 2	W	395	398	anti-parallel

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There are 2 strands in WB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	411	412	first strand
Strand 2	X	95	96	anti-parallel

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There are 5 strands in WC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	435	437	first strand
Strand 2	W	468	475	parallel
Strand 3	W	478	485	anti-parallel
Strand 4	W	490	494	anti-parallel
Strand 5	W	530	533	parallel

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There are 4 strands in XA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	34	36	first strand
Strand 2	X	24	28	anti-parallel
Strand 3	X	86	92	parallel
Strand 4	X	62	63	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 5AEK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEK