Analysis of interatomic Contacts of Structural Units in PDB entry:
5AES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AES entry

There are 2 chains in PDB entry 5AES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 290
B
 MET 1GLU 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5AES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
64 76Right-handed alpha
Helix 4
4
A
81 83Right-handed 310
Helix 5
5
A
88 100Right-handed alpha
Helix 6
6
A
115 125Right-handed alpha
Helix 7
7
A
151 163Right-handed alpha
Helix 8
8
A
188 201Right-handed alpha
Helix 9
9
A
212 222Right-handed alpha
Helix 10
10
A
225 227Right-handed 310
Helix 11
11
A
238 247Right-handed alpha
Helix 12
12
A
259 269Right-handed alpha
Helix 13
13
A
271 275Right-handed 310
Helix 14
14
A
282 290Right-handed 310
Helix 15
15
B
8 19Right-handed alpha
Helix 16
16
B
39 50Right-handed alpha
Helix 17
17
B
64 76Right-handed alpha
Helix 18
18
B
81 83Right-handed 310
Helix 19
19
B
88 100Right-handed alpha
Helix 20
20
B
115 125Right-handed alpha
Helix 21
21
B
151 163Right-handed alpha
Helix 22
22
B
188 201Right-handed alpha
Helix 23
23
B
212 222Right-handed alpha
Helix 24
24
B
225 227Right-handed 310
Helix 25
25
B
238 247Right-handed alpha
Helix 26
26
B
259 269Right-handed alpha
Helix 27
27
B
271 275Right-handed 310
Helix 28
28
B
282 290Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5AES. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
278 280parallel
Strand 3
A
249 253parallel
Strand 4
A
229 233parallel
Strand 5
A
21 25parallel
Strand 6
A
53 58parallel
Strand 7
A
85 87parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
109 113parallel
Strand 3
A
139 144parallel
Strand 4
A
168 171parallel
Strand 5
A
205 206parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
185 187anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
278 280parallel
Strand 3
B
249 253parallel
Strand 4
B
229 233parallel
Strand 5
B
21 25parallel
Strand 6
B
53 58parallel
Strand 7
B
85 87parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
35 36anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
109 113parallel
Strand 3
B
139 144parallel
Strand 4
B
168 171parallel
Strand 5
B
205 206parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 179first strand
Strand 2
B
185 187anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il