Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AEU entry

There are 8 chains in PDB entry 5AEU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 18	PRO 459
B	PRO 6	PHE 188
C	ASN 18	PRO 459
D	HIS 7	PHE 188
E	ASN 18	PRO 459
F	HIS 7	PHE 188
G	ASN 18	PRO 459
H	HIS 7	PHE 188

There are 98 helices in PDB entry 5AEU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	20	27	Right-handed alpha
Helix 2	2	A	37	41	Right-handed 310
Helix 3	3	A	42	53	Right-handed alpha
Helix 4	4	A	65	67	Right-handed 310
Helix 5	5	A	138	143	Right-handed alpha
Helix 6	6	A	154	158	Right-handed 310
Helix 7	7	A	182	188	Right-handed alpha
Helix 8	8	A	190	199	Right-handed alpha
Helix 9	9	A	219	230	Right-handed alpha
Helix 10	10	A	239	246	Right-handed alpha
Helix 11	11	A	281	289	Right-handed alpha
Helix 12	12	A	289	298	Right-handed alpha
Helix 13	13	A	299	309	Right-handed alpha
Helix 14	14	A	310	313	Right-handed 310
Helix 15	15	A	315	317	Right-handed 310
Helix 16	16	A	363	378	Right-handed alpha
Helix 17	17	A	384	399	Right-handed alpha
Helix 18	18	A	402	406	Right-handed 310
Helix 19	19	A	435	451	Right-handed alpha
Helix 20	20	A	453	458	Right-handed alpha
Helix 21	21	B	9	13	Right-handed 310
Helix 22	22	B	20	41	Right-handed alpha
Helix 23	23	B	42	48	Right-handed alpha
Helix 24	24	B	65	72	Right-handed 310
Helix 25	25	B	85	98	Right-handed alpha
Helix 26	26	B	101	105	Right-handed 310
Helix 27	27	C	20	26	Right-handed alpha
Helix 28	28	C	37	42	Right-handed alpha
Helix 29	29	C	42	53	Right-handed alpha
Helix 30	30	C	65	67	Right-handed 310
Helix 31	31	C	154	158	Right-handed 310
Helix 32	32	C	182	188	Right-handed alpha
Helix 33	33	C	190	199	Right-handed alpha
Helix 34	34	C	219	230	Right-handed alpha
Helix 35	35	C	231	236	Right-handed alpha
Helix 36	36	C	239	247	Right-handed alpha
Helix 37	37	C	252	256	Right-handed 310
Helix 38	38	C	280	298	Right-handed alpha
Helix 39	39	C	299	309	Right-handed alpha
Helix 40	40	C	310	313	Right-handed 310
Helix 41	41	C	315	317	Right-handed 310
Helix 42	42	C	363	378	Right-handed alpha
Helix 43	43	C	384	399	Right-handed alpha
Helix 44	44	C	402	406	Right-handed 310
Helix 45	45	C	435	451	Right-handed alpha
Helix 46	46	C	453	458	Right-handed alpha
Helix 47	47	D	20	40	Right-handed alpha
Helix 48	48	D	42	48	Right-handed alpha
Helix 49	49	D	65	72	Right-handed 310
Helix 50	50	D	85	97	Right-handed alpha
Helix 51	51	D	101	105	Right-handed 310
Helix 52	52	E	37	40	Right-handed 310
Helix 53	53	E	42	53	Right-handed alpha
Helix 54	54	E	65	67	Right-handed 310
Helix 55	55	E	138	143	Right-handed alpha
Helix 56	56	E	154	158	Right-handed 310
Helix 57	57	E	182	188	Right-handed alpha
Helix 58	58	E	190	199	Right-handed alpha
Helix 59	59	E	219	230	Right-handed alpha
Helix 60	60	E	239	245	Right-handed alpha
Helix 61	61	E	281	298	Right-handed alpha
Helix 62	62	E	299	307	Right-handed alpha
Helix 63	63	E	309	313	Right-handed 310
Helix 64	64	E	315	317	Right-handed 310
Helix 65	65	E	363	378	Right-handed alpha
Helix 66	66	E	384	399	Right-handed alpha
Helix 67	67	E	402	407	Right-handed alpha
Helix 68	68	E	435	451	Right-handed alpha
Helix 69	69	E	453	458	Right-handed alpha
Helix 70	70	F	20	40	Right-handed alpha
Helix 71	71	F	42	48	Right-handed alpha
Helix 72	72	F	65	72	Right-handed 310
Helix 73	73	F	85	97	Right-handed alpha
Helix 74	74	G	20	27	Right-handed alpha
Helix 75	75	G	37	41	Right-handed 310
Helix 76	76	G	42	53	Right-handed alpha
Helix 77	77	G	54	57	Right-handed 310
Helix 78	78	G	65	67	Right-handed 310
Helix 79	79	G	138	143	Right-handed alpha
Helix 80	80	G	154	158	Right-handed 310
Helix 81	81	G	182	188	Right-handed alpha
Helix 82	82	G	190	199	Right-handed alpha
Helix 83	83	G	219	229	Right-handed alpha
Helix 84	84	G	231	236	Right-handed alpha
Helix 85	85	G	239	246	Right-handed alpha
Helix 86	86	G	281	289	Right-handed alpha
Helix 87	87	G	289	297	Right-handed alpha
Helix 88	88	G	298	310	Right-handed alpha
Helix 89	89	G	363	377	Right-handed alpha
Helix 90	90	G	384	399	Right-handed alpha
Helix 91	91	G	402	406	Right-handed 310
Helix 92	92	G	435	451	Right-handed alpha
Helix 93	93	G	453	458	Right-handed alpha
Helix 94	94	H	20	40	Right-handed alpha
Helix 95	95	H	42	48	Right-handed alpha
Helix 96	96	H	65	72	Right-handed 310
Helix 97	97	H	85	97	Right-handed alpha
Helix 98	98	H	101	105	Right-handed 310

There are 33 sheets in PDB entry 5AEU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, CA, CB, CC, CD, CE, CF, CG, A, EA, EB, EC, ED, EE, EF, EG, EH, FA, GA, GB, GC, GD, GE, GF, GG, HA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	34	35	anti-parallel
Strand 3	A	409	410	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	171	175	anti-parallel
Strand 3	A	162	168	anti-parallel
Strand 4	A	93	97	anti-parallel
Strand 5	A	81	87	anti-parallel
Strand 6	A	72	78	anti-parallel
Strand 7	A	112	114	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	126	127	anti-parallel
Strand 3	A	133	135	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	350	359	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	350	359	anti-parallel

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There are 8 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	273	278	anti-parallel
Strand 4	A	319	326	anti-parallel
Strand 5	A	330	332	anti-parallel
Strand 6	A	338	344	anti-parallel
Strand 7	A	350	359	anti-parallel
Strand 8	A	212	216	anti-parallel

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There are 8 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	273	278	anti-parallel
Strand 4	A	319	326	anti-parallel
Strand 5	A	330	332	anti-parallel
Strand 6	A	338	344	anti-parallel
Strand 7	A	350	359	anti-parallel
Strand 8	A	205	207	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	84	first strand
Strand 2	B	50	59	anti-parallel
Strand 3	B	165	174	parallel
Strand 4	B	144	158	anti-parallel
Strand 5	B	127	140	anti-parallel
Strand 6	B	109	121	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	34	35	anti-parallel
Strand 3	C	409	410	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	162	168	anti-parallel
Strand 4	C	93	97	anti-parallel
Strand 5	C	81	87	anti-parallel
Strand 6	C	72	78	anti-parallel
Strand 7	C	112	114	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	126	127	anti-parallel
Strand 3	C	133	135	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	207	first strand
Strand 2	C	350	359	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	350	359	anti-parallel

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There are 9 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	421	first strand
Strand 2	C	426	431	anti-parallel
Strand 3	C	262	266	anti-parallel
Strand 4	C	273	278	anti-parallel
Strand 5	C	319	326	anti-parallel
Strand 6	C	330	332	anti-parallel
Strand 7	C	338	344	anti-parallel
Strand 8	C	350	359	anti-parallel
Strand 9	C	212	216	anti-parallel

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There are 9 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	421	first strand
Strand 2	C	426	431	anti-parallel
Strand 3	C	262	266	anti-parallel
Strand 4	C	273	278	anti-parallel
Strand 5	C	319	326	anti-parallel
Strand 6	C	330	332	anti-parallel
Strand 7	C	338	344	anti-parallel
Strand 8	C	350	359	anti-parallel
Strand 9	C	205	207	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	84	first strand
Strand 2	D	50	59	anti-parallel
Strand 3	D	165	174	parallel
Strand 4	D	144	158	anti-parallel
Strand 5	D	127	140	anti-parallel
Strand 6	D	109	121	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	29	first strand
Strand 2	E	34	35	anti-parallel
Strand 3	E	409	410	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	63	first strand
Strand 2	E	171	175	anti-parallel
Strand 3	E	162	168	anti-parallel
Strand 4	E	93	97	anti-parallel
Strand 5	E	81	87	anti-parallel
Strand 6	E	72	78	anti-parallel
Strand 7	E	112	114	anti-parallel

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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	126	127	anti-parallel
Strand 3	E	133	135	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	207	first strand
Strand 2	E	350	359	anti-parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	216	first strand
Strand 2	E	350	359	parallel

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There are 6 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	278	first strand
Strand 2	E	319	326	anti-parallel
Strand 3	E	330	332	anti-parallel
Strand 4	E	338	344	anti-parallel
Strand 5	E	350	359	anti-parallel
Strand 6	E	212	216	parallel

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There are 6 strands in EG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	278	first strand
Strand 2	E	319	326	anti-parallel
Strand 3	E	330	332	anti-parallel
Strand 4	E	338	344	anti-parallel
Strand 5	E	350	359	anti-parallel
Strand 6	E	205	207	anti-parallel

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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	266	first strand
Strand 2	E	428	431	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	84	first strand
Strand 2	F	50	59	anti-parallel
Strand 3	F	165	174	parallel
Strand 4	F	144	158	anti-parallel
Strand 5	F	127	140	anti-parallel
Strand 6	F	109	121	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	34	35	anti-parallel
Strand 3	G	409	410	anti-parallel

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There are 7 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	171	175	anti-parallel
Strand 3	G	162	168	anti-parallel
Strand 4	G	93	97	anti-parallel
Strand 5	G	81	87	anti-parallel
Strand 6	G	72	78	anti-parallel
Strand 7	G	112	114	anti-parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	G	126	127	anti-parallel
Strand 3	G	133	135	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	205	207	first strand
Strand 2	G	350	359	anti-parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	216	first strand
Strand 2	G	350	359	anti-parallel

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There are 8 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	428	431	first strand
Strand 2	G	262	266	anti-parallel
Strand 3	G	273	278	anti-parallel
Strand 4	G	319	326	anti-parallel
Strand 5	G	330	332	anti-parallel
Strand 6	G	338	344	anti-parallel
Strand 7	G	350	359	anti-parallel
Strand 8	G	212	216	anti-parallel

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There are 8 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	428	431	first strand
Strand 2	G	262	266	anti-parallel
Strand 3	G	273	278	anti-parallel
Strand 4	G	319	326	anti-parallel
Strand 5	G	330	332	anti-parallel
Strand 6	G	338	344	anti-parallel
Strand 7	G	350	359	anti-parallel
Strand 8	G	205	207	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	84	first strand
Strand 2	H	50	58	anti-parallel
Strand 3	H	165	174	parallel
Strand 4	H	144	158	anti-parallel
Strand 5	H	127	140	anti-parallel
Strand 6	H	109	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AEU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEU