Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AEY entry

There are 5 chains in PDB entry 5AEY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 318
B	MET 1	ILE 318
C	MET 1	ILE 318
D	MET 1	ILE 318
E	MET 1	ILE 318

There are 70 helices in PDB entry 5AEY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	69	74	Right-handed 310
Helix 2	2	A	75	88	Right-handed alpha
Helix 3	3	A	103	108	Right-handed alpha
Helix 4	4	A	115	126	Right-handed alpha
Helix 5	5	A	149	152	Right-handed 310
Helix 6	6	A	153	159	Right-handed alpha
Helix 7	7	A	199	213	Right-handed alpha
Helix 8	8	A	218	228	Right-handed alpha
Helix 9	9	A	231	237	Right-handed alpha
Helix 10	10	A	244	268	Right-handed alpha
Helix 11	11	A	282	294	Right-handed alpha
Helix 12	12	A	297	299	Right-handed 310
Helix 13	13	A	306	308	Right-handed 310
Helix 14	14	A	309	317	Right-handed alpha
Helix 15	15	B	69	74	Right-handed 310
Helix 16	16	B	75	88	Right-handed alpha
Helix 17	17	B	103	108	Right-handed alpha
Helix 18	18	B	115	126	Right-handed alpha
Helix 19	19	B	149	152	Right-handed 310
Helix 20	20	B	153	159	Right-handed alpha
Helix 21	21	B	199	213	Right-handed alpha
Helix 22	22	B	218	228	Right-handed alpha
Helix 23	23	B	231	237	Right-handed alpha
Helix 24	24	B	244	268	Right-handed alpha
Helix 25	25	B	282	294	Right-handed alpha
Helix 26	26	B	297	299	Right-handed 310
Helix 27	27	B	306	308	Right-handed 310
Helix 28	28	B	309	317	Right-handed alpha
Helix 29	29	C	69	74	Right-handed 310
Helix 30	30	C	75	88	Right-handed alpha
Helix 31	31	C	103	108	Right-handed alpha
Helix 32	32	C	115	126	Right-handed alpha
Helix 33	33	C	149	152	Right-handed 310
Helix 34	34	C	153	159	Right-handed alpha
Helix 35	35	C	199	213	Right-handed alpha
Helix 36	36	C	218	228	Right-handed alpha
Helix 37	37	C	231	237	Right-handed alpha
Helix 38	38	C	244	268	Right-handed alpha
Helix 39	39	C	282	294	Right-handed alpha
Helix 40	40	C	297	299	Right-handed 310
Helix 41	41	C	306	308	Right-handed 310
Helix 42	42	C	309	317	Right-handed alpha
Helix 43	43	D	69	74	Right-handed 310
Helix 44	44	D	75	88	Right-handed alpha
Helix 45	45	D	103	108	Right-handed alpha
Helix 46	46	D	115	126	Right-handed alpha
Helix 47	47	D	149	152	Right-handed 310
Helix 48	48	D	153	159	Right-handed alpha
Helix 49	49	D	199	213	Right-handed alpha
Helix 50	50	D	218	228	Right-handed alpha
Helix 51	51	D	231	237	Right-handed alpha
Helix 52	52	D	244	268	Right-handed alpha
Helix 53	53	D	282	294	Right-handed alpha
Helix 54	54	D	297	299	Right-handed 310
Helix 55	55	D	306	308	Right-handed 310
Helix 56	56	D	309	317	Right-handed alpha
Helix 57	57	E	69	74	Right-handed 310
Helix 58	58	E	75	88	Right-handed alpha
Helix 59	59	E	103	108	Right-handed alpha
Helix 60	60	E	115	126	Right-handed alpha
Helix 61	61	E	149	152	Right-handed 310
Helix 62	62	E	153	159	Right-handed alpha
Helix 63	63	E	199	213	Right-handed alpha
Helix 64	64	E	218	228	Right-handed alpha
Helix 65	65	E	231	237	Right-handed alpha
Helix 66	66	E	244	268	Right-handed alpha
Helix 67	67	E	282	294	Right-handed alpha
Helix 68	68	E	297	299	Right-handed 310
Helix 69	69	E	306	308	Right-handed 310
Helix 70	70	E	309	317	Right-handed alpha

There are 15 sheets in PDB entry 5AEY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	29	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	95	102	parallel
Strand 5	A	139	147	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	54	57	anti-parallel
Strand 3	A	47	49	anti-parallel
Strand 4	A	131	132	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	194	first strand
Strand 2	A	176	182	anti-parallel
Strand 3	A	165	171	anti-parallel
Strand 4	A	275	279	parallel
Strand 5	A	301	302	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	29	first strand
Strand 2	B	11	18	anti-parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	95	102	parallel
Strand 5	B	139	147	parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	54	57	anti-parallel
Strand 3	B	47	49	anti-parallel
Strand 4	B	131	132	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	194	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	165	171	anti-parallel
Strand 4	B	275	279	parallel
Strand 5	B	301	302	parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	29	first strand
Strand 2	C	11	18	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	C	95	102	parallel
Strand 5	C	139	147	parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	47	49	anti-parallel
Strand 4	C	131	132	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	194	first strand
Strand 2	C	176	182	anti-parallel
Strand 3	C	165	171	anti-parallel
Strand 4	C	275	279	parallel
Strand 5	C	301	302	parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	29	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	2	7	anti-parallel
Strand 4	D	95	102	parallel
Strand 5	D	139	147	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	54	57	anti-parallel
Strand 3	D	47	49	anti-parallel
Strand 4	D	131	132	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	194	first strand
Strand 2	D	176	182	anti-parallel
Strand 3	D	165	171	anti-parallel
Strand 4	D	275	279	parallel
Strand 5	D	301	302	parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	29	first strand
Strand 2	E	11	18	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	E	95	102	parallel
Strand 5	E	139	147	parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	54	57	anti-parallel
Strand 3	E	47	49	anti-parallel
Strand 4	E	131	132	anti-parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	194	first strand
Strand 2	E	176	182	anti-parallel
Strand 3	E	165	171	anti-parallel
Strand 4	E	275	279	parallel
Strand 5	E	301	302	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AEY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEY