Analysis of interatomic Contacts of Structural Units in PDB entry:
5AF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AF0 entry

There are 4 chains in PDB entry 5AF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 90PHE 334
B
 MET 89PHE 334
C
 ARG 87PHE 334
D
 GLN 86PHE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5AF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 110Right-handed alpha
Helix 2
2
A
166 178Right-handed alpha
Helix 3
3
A
190 203Right-handed alpha
Helix 4
4
A
218 220Right-handed 310
Helix 5
5
A
221 235Right-handed alpha
Helix 6
6
A
239 243Right-handed 310
Helix 7
7
A
248 259Right-handed alpha
Helix 8
8
A
270 280Right-handed alpha
Helix 9
9
A
290 296Right-handed alpha
Helix 10
10
A
302 319Right-handed alpha
Helix 11
11
A
320 323Right-handed 310
Helix 12
12
B
89 92Right-handed 310
Helix 13
13
B
93 110Right-handed alpha
Helix 14
14
B
166 177Right-handed alpha
Helix 15
15
B
183 187Right-handed 310
Helix 16
16
B
190 203Right-handed alpha
Helix 17
17
B
218 220Right-handed 310
Helix 18
18
B
221 235Right-handed alpha
Helix 19
19
B
239 243Right-handed 310
Helix 20
20
B
248 259Right-handed alpha
Helix 21
21
B
270 279Right-handed alpha
Helix 22
22
B
290 296Right-handed alpha
Helix 23
23
B
302 319Right-handed alpha
Helix 24
24
B
320 323Right-handed 310
Helix 25
25
C
89 110Right-handed alpha
Helix 26
26
C
166 178Right-handed alpha
Helix 27
27
C
190 203Right-handed alpha
Helix 28
28
C
221 235Right-handed alpha
Helix 29
29
C
239 243Right-handed 310
Helix 30
30
C
248 257Right-handed alpha
Helix 31
31
C
270 280Right-handed alpha
Helix 32
32
C
290 296Right-handed alpha
Helix 33
33
C
302 319Right-handed alpha
Helix 34
34
C
320 323Right-handed 310
Helix 35
35
D
89 92Right-handed 310
Helix 36
36
D
93 110Right-handed alpha
Helix 37
37
D
166 178Right-handed alpha
Helix 38
38
D
192 203Right-handed alpha
Helix 39
39
D
218 235Right-handed alpha
Helix 40
40
D
239 243Right-handed 310
Helix 41
41
D
248 257Right-handed alpha
Helix 42
42
D
270 280Right-handed alpha
Helix 43
43
D
290 296Right-handed alpha
Helix 44
44
D
302 319Right-handed alpha
Helix 45
45
D
320 323Right-handed 310
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There are 6 sheets in PDB entry 5AF0. Click on sheet of interest to get list of strands forming it: AA, BA, BB, CA, CB, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 156first strand
Strand 2
A
132 144anti-parallel
Strand 3
A
118 129anti-parallel
Strand 4
A
215 217parallel
Strand 5
A
245 247parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 129first strand
Strand 2
B
132 144anti-parallel
Strand 3
B
148 156anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
244 247parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 129first strand
Strand 2
C
132 144anti-parallel
Strand 3
C
148 156anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
244 247parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 156first strand
Strand 2
D
132 144anti-parallel
Strand 3
D
118 129anti-parallel
Strand 4
D
214 217parallel
Strand 5
D
244 247parallel
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