Analysis of interatomic Contacts of Structural Units in PDB entry:
5AF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AF7 entry

There are 2 chains in PDB entry 5AF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3TYR 392
B
 GLU 3LEU 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 5AF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 22Right-handed alpha
Helix 2
2
A
23 25Right-handed 310
Helix 3
3
A
26 34Right-handed alpha
Helix 4
4
A
37 47Right-handed alpha
Helix 5
5
A
55 59Right-handed 310
Helix 6
6
A
64 79Right-handed alpha
Helix 7
7
A
79 89Right-handed alpha
Helix 8
8
A
92 101Right-handed alpha
Helix 9
9
A
102 115Right-handed alpha
Helix 10
10
A
131 135Right-handed 310
Helix 11
11
A
231 241Right-handed alpha
Helix 12
12
A
241 272Right-handed alpha
Helix 13
13
A
282 309Right-handed alpha
Helix 14
14
A
315 341Right-handed alpha
Helix 15
15
A
342 347Right-handed alpha
Helix 16
16
A
351 360Right-handed alpha
Helix 17
17
A
361 364Right-handed 310
Helix 18
18
A
368 381Right-handed alpha
Helix 19
19
B
5 22Right-handed alpha
Helix 20
20
B
23 25Right-handed 310
Helix 21
21
B
26 34Right-handed alpha
Helix 22
22
B
37 47Right-handed alpha
Helix 23
23
B
55 59Right-handed 310
Helix 24
24
B
64 79Right-handed alpha
Helix 25
25
B
79 89Right-handed alpha
Helix 26
26
B
92 101Right-handed alpha
Helix 27
27
B
102 115Right-handed alpha
Helix 28
28
B
131 135Right-handed 310
Helix 29
29
B
231 272Right-handed alpha
Helix 30
30
B
282 308Right-handed alpha
Helix 31
31
B
315 341Right-handed alpha
Helix 32
32
B
342 347Right-handed alpha
Helix 33
33
B
351 360Right-handed alpha
Helix 34
34
B
361 364Right-handed 310
Helix 35
35
B
368 382Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5AF7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
163 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 185first strand
Strand 2
A
163 172anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
210 221anti-parallel
Strand 3
A
145 156anti-parallel
Strand 4
A
138 142anti-parallel
Strand 5
A
163 172parallel
Strand 6
A
175 185anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
210 221anti-parallel
Strand 3
A
145 156anti-parallel
Strand 4
A
138 142anti-parallel
Strand 5
A
163 172parallel
Strand 6
A
120 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
277 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
163 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 185first strand
Strand 2
B
163 172anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
210 221anti-parallel
Strand 3
B
145 156anti-parallel
Strand 4
B
138 142anti-parallel
Strand 5
B
163 172parallel
Strand 6
B
175 185anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
210 221anti-parallel
Strand 3
B
145 156anti-parallel
Strand 4
B
138 142anti-parallel
Strand 5
B
163 172parallel
Strand 6
B
120 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
277 278anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il