Analysis of interatomic Contacts of Structural Units in PDB entry:
5AFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AFD entry

There is 1 chain in PDB entry 5AFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5AFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 36Right-handed alpha
Helix 2
2
A
49 53Right-handed 310
Helix 3
3
A
54 70Right-handed alpha
Helix 4
4
A
83 96Right-handed alpha
Helix 5
5
A
114 127Right-handed alpha
Helix 6
6
A
147 159Right-handed alpha
Helix 7
7
A
171 185Right-handed alpha
Helix 8
8
A
192 194Right-handed 310
Helix 9
9
A
195 202Right-handed alpha
Helix 10
10
A
211 228Right-handed alpha
Helix 11
11
A
230 252Right-handed alpha
Helix 12
12
A
252 261Right-handed alpha
Helix 13
13
A
262 265Right-handed 310
Helix 14
14
A
279 293Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 5AFD.

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 167first strand
Strand 2
A
133 138parallel
Strand 3
A
101 105parallel
Strand 4
A
74 78parallel
Strand 5
A
40 43parallel
Strand 6
A
6 9parallel
Strand 7
A
206 209parallel
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