Analysis of interatomic Contacts of Structural Units in PDB entry:
5AFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AFF entry

There are 3 chains in PDB entry 5AFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 26ALA 674
B
 ALA 2TYR 30
C
 ILE 15PHE 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5AFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 45Right-handed alpha
Helix 2
2
A
49 63Right-handed alpha
Helix 3
3
A
64 74Right-handed alpha
Helix 4
4
A
75 83Right-handed alpha
Helix 5
5
A
84 87Right-handed 310
Helix 6
6
A
89 107Right-handed alpha
Helix 7
7
A
108 118Right-handed alpha
Helix 8
8
A
119 137Right-handed alpha
Helix 9
9
A
141 145Right-handed 310
Helix 10
10
A
146 171Right-handed alpha
Helix 11
11
A
171 179Right-handed alpha
Helix 12
12
A
181 195Right-handed alpha
Helix 13
13
A
198 213Right-handed alpha
Helix 14
14
A
216 225Right-handed alpha
Helix 15
15
A
230 241Right-handed alpha
Helix 16
16
A
245 260Right-handed alpha
Helix 17
17
A
268 272Right-handed 310
Helix 18
18
A
273 276Right-handed 310
Helix 19
19
A
277 287Right-handed alpha
Helix 20
20
A
301 327Right-handed alpha
Helix 21
21
A
388 398Right-handed alpha
Helix 22
22
A
411 420Right-handed alpha
Helix 23
23
A
420 431Right-handed alpha
Helix 24
24
A
436 458Right-handed alpha
Helix 25
25
A
466 492Right-handed alpha
Helix 26
26
A
496 514Right-handed alpha
Helix 27
27
A
522 534Right-handed alpha
Helix 28
28
A
550 553Right-handed 310
Helix 29
29
A
554 566Right-handed alpha
Helix 30
30
A
572 589Right-handed alpha
Helix 31
31
A
594 609Right-handed alpha
Helix 32
32
A
614 620Right-handed alpha
Helix 33
33
A
625 643Right-handed alpha
Helix 34
34
A
649 673Right-handed alpha
Helix 35
35
B
8 15Right-handed alpha
Helix 36
36
C
28 43Right-handed alpha
Helix 37
37
C
74 88Right-handed alpha
Helix 38
38
C
155 166Right-handed alpha
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There are 2 sheets in PDB entry 5AFF. Click on sheet of interest to get list of strands forming it: CA, CB,

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 23first strand
Strand 2
C
67 73anti-parallel
Strand 3
C
47 48anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 107first strand
Strand 2
C
126 130anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il