Analysis of interatomic Contacts of Structural Units in PDB entry:
5AFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AFP entry

There are 4 chains in PDB entry 5AFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8SER 184
B
 LEU 8SER 184
C
 LEU 6ALA 17
D
 LEU 6ALA 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5AFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 19Right-handed alpha
Helix 2
2
A
23 38Right-handed alpha
Helix 3
3
A
44 56Right-handed alpha
Helix 4
4
A
61 73Right-handed alpha
Helix 5
5
A
82 95Right-handed alpha
Helix 6
6
A
96 109Right-handed alpha
Helix 7
7
A
118 133Right-handed alpha
Helix 8
8
A
139 143Right-handed 310
Helix 9
9
A
144 157Right-handed alpha
Helix 10
10
A
165 176Right-handed alpha
Helix 11
11
A
176 183Right-handed alpha
Helix 12
12
B
9 20Right-handed alpha
Helix 13
13
B
23 38Right-handed alpha
Helix 14
14
B
44 54Right-handed alpha
Helix 15
15
B
61 73Right-handed alpha
Helix 16
16
B
82 95Right-handed alpha
Helix 17
17
B
96 109Right-handed alpha
Helix 18
18
B
118 132Right-handed alpha
Helix 19
19
B
139 143Right-handed 310
Helix 20
20
B
144 157Right-handed alpha
Helix 21
21
B
165 176Right-handed alpha
Helix 22
22
B
176 183Right-handed alpha
Helix 23
23
C
6 15Right-handed alpha
Helix 24
24
D
6 15Right-handed alpha
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There are 4 sheets in PDB entry 5AFP. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
80 81anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
163 164anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
80 81anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
163 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il