Analysis of interatomic Contacts of Structural Units in PDB entry:
5AFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AFQ entry

There are 4 chains in PDB entry 5AFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 532
B
 MET 1LYS 532
D
 UNK -15UNK 156
E
 UNK 2UNK 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 5AFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 17Right-handed alpha
Helix 2
2
A
18 31Right-handed alpha
Helix 3
3
A
36 43Right-handed alpha
Helix 4
4
A
46 60Right-handed alpha
Helix 5
5
A
78 84Right-handed alpha
Helix 6
6
A
87 99Right-handed alpha
Helix 7
7
A
99 113Right-handed alpha
Helix 8
8
A
117 129Right-handed alpha
Helix 9
9
A
140 154Right-handed alpha
Helix 10
10
A
238 259Right-handed alpha
Helix 11
11
A
260 273Right-handed alpha
Helix 12
12
A
290 296Right-handed alpha
Helix 13
13
A
304 317Right-handed alpha
Helix 14
14
A
337 358Right-handed alpha
Helix 15
15
A
358 369Right-handed alpha
Helix 16
16
A
377 385Right-handed alpha
Helix 17
17
A
387 401Right-handed alpha
Helix 18
18
A
427 457Right-handed alpha
Helix 19
19
A
460 469Right-handed alpha
Helix 20
20
A
480 491Right-handed alpha
Helix 21
21
A
492 530Right-handed alpha
Helix 22
22
B
2 17Right-handed alpha
Helix 23
23
B
18 31Right-handed alpha
Helix 24
24
B
36 43Right-handed alpha
Helix 25
25
B
46 60Right-handed alpha
Helix 26
26
B
78 84Right-handed alpha
Helix 27
27
B
87 99Right-handed alpha
Helix 28
28
B
99 113Right-handed alpha
Helix 29
29
B
118 129Right-handed alpha
Helix 30
30
B
140 154Right-handed alpha
Helix 31
31
B
238 259Right-handed alpha
Helix 32
32
B
260 273Right-handed alpha
Helix 33
33
B
290 296Right-handed alpha
Helix 34
34
B
304 317Right-handed alpha
Helix 35
35
B
337 358Right-handed alpha
Helix 36
36
B
358 369Right-handed alpha
Helix 37
37
B
377 385Right-handed alpha
Helix 38
38
B
387 401Right-handed alpha
Helix 39
39
B
427 457Right-handed alpha
Helix 40
40
B
460 469Right-handed alpha
Helix 41
41
B
479 491Right-handed alpha
Helix 42
42
B
492 530Right-handed alpha
Helix 43
43
D
4 20Right-handed alpha
Helix 44
44
E
3 20Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5AFQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
333 336anti-parallel
Strand 3
A
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
72 76anti-parallel
Strand 3
B
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
234 237anti-parallel
Strand 3
B
157 159anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
333 336anti-parallel
Strand 3
B
323 325anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il