Analysis of interatomic Contacts of Structural Units in PDB entry:
5AFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AFR entry

There are 2 chains in PDB entry 5AFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ARG 410
B
 ARG 7ARG 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 5AFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 22Right-handed alpha
Helix 2
2
A
31 51Right-handed alpha
Helix 3
3
A
83 90Right-handed alpha
Helix 4
4
A
125 145Right-handed alpha
Helix 5
5
A
157 179Right-handed alpha
Helix 6
6
A
189 198Right-handed alpha
Helix 7
7
A
216 237Right-handed alpha
Helix 8
8
A
248 270Right-handed alpha
Helix 9
9
A
274 284Right-handed alpha
Helix 10
10
A
290 312Right-handed alpha
Helix 11
11
A
328 345Right-handed alpha
Helix 12
12
A
351 374Right-handed alpha
Helix 13
13
A
381 410Right-handed alpha
Helix 14
14
B
7 22Right-handed alpha
Helix 15
15
B
31 51Right-handed alpha
Helix 16
16
B
82 90Right-handed alpha
Helix 17
17
B
125 145Right-handed alpha
Helix 18
18
B
157 180Right-handed alpha
Helix 19
19
B
191 199Right-handed alpha
Helix 20
20
B
216 236Right-handed alpha
Helix 21
21
B
248 270Right-handed alpha
Helix 22
22
B
274 284Right-handed alpha
Helix 23
23
B
291 311Right-handed alpha
Helix 24
24
B
328 345Right-handed alpha
Helix 25
25
B
352 374Right-handed alpha
Helix 26
26
B
381 410Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5AFR. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
75 77anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
95 98anti-parallel
Strand 3
B
117 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il