Analysis of interatomic Contacts of Structural Units in PDB entry:
5AG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AG3 entry

There are 3 chains in PDB entry 5AG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8MET 340
B
 ASN 9MET 340
C
 LEU 6MET 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5AG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
103 121Right-handed alpha
Helix 2
2
A
145 161Right-handed alpha
Helix 3
3
A
164 168Right-handed 310
Helix 4
4
A
203 207Right-handed 310
Helix 5
5
A
254 271Right-handed alpha
Helix 6
6
A
271 278Right-handed alpha
Helix 7
7
A
285 287Right-handed 310
Helix 8
8
A
298 300Right-handed 310
Helix 9
9
A
301 313Right-handed alpha
Helix 10
10
B
103 122Right-handed alpha
Helix 11
11
B
145 161Right-handed alpha
Helix 12
12
B
164 168Right-handed 310
Helix 13
13
B
203 207Right-handed 310
Helix 14
14
B
208 212Right-handed 310
Helix 15
15
B
254 270Right-handed alpha
Helix 16
16
B
271 278Right-handed alpha
Helix 17
17
B
285 287Right-handed 310
Helix 18
18
B
298 300Right-handed 310
Helix 19
19
B
301 313Right-handed alpha
Helix 20
20
C
103 122Right-handed alpha
Helix 21
21
C
145 161Right-handed alpha
Helix 22
22
C
203 207Right-handed 310
Helix 23
23
C
208 212Right-handed 310
Helix 24
24
C
254 271Right-handed alpha
Helix 25
25
C
271 277Right-handed alpha
Helix 26
26
C
285 287Right-handed 310
Helix 27
27
C
298 300Right-handed 310
Helix 28
28
C
301 313Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 5AG3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
29 37anti-parallel
Strand 4
A
51 55parallel
Strand 5
A
41 44anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
181 188anti-parallel
Strand 5
A
125 134anti-parallel
Strand 6
A
170 176parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
221 224anti-parallel
Strand 3
A
235 241anti-parallel
Strand 4
A
333 339anti-parallel
Strand 5
A
289 296anti-parallel
Strand 6
A
319 323parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
248 249anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
29 37anti-parallel
Strand 4
B
51 55parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
90 97anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
125 134anti-parallel
Strand 6
B
170 176parallel
Back to list of sheets
Back to top of page

There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
221 224anti-parallel
Strand 3
B
235 241anti-parallel
Strand 4
B
333 339anti-parallel
Strand 5
B
289 296anti-parallel
Strand 6
B
319 323parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
248 249anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 17first strand
Strand 2
C
64 70anti-parallel
Strand 3
C
29 37anti-parallel
Strand 4
C
51 55parallel
Back to list of sheets
Back to top of page

There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 79first strand
Strand 2
C
82 86anti-parallel
Strand 3
C
90 97anti-parallel
Strand 4
C
181 188anti-parallel
Strand 5
C
125 134anti-parallel
Strand 6
C
170 176parallel
Back to list of sheets
Back to top of page

There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
221 224anti-parallel
Strand 3
C
235 241anti-parallel
Strand 4
C
333 339anti-parallel
Strand 5
C
289 296anti-parallel
Strand 6
C
319 323parallel
Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 245first strand
Strand 2
C
248 249anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il