Analysis of interatomic Contacts of Structural Units in PDB entry:
5AG9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AG9 entry

There are 2 chains in PDB entry 5AG9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 579	LYS 736
B	VAL 579	LYS 736

There are no helices in PDB entry 5AG9

There are 12 sheets in PDB entry 5AG9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	597	602	anti-parallel
Strand 3	A	627	631	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	654	661	parallel
Strand 3	A	641	647	anti-parallel
Strand 4	A	608	613	anti-parallel
Strand 5	A	616	622	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	679	first strand
Strand 2	A	682	695	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	712	first strand
Strand 2	A	682	695	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	735	first strand
Strand 2	A	716	723	anti-parallel
Strand 3	A	682	695	anti-parallel
Strand 4	A	701	712	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	735	first strand
Strand 2	A	716	723	anti-parallel
Strand 3	A	682	695	anti-parallel
Strand 4	A	675	679	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	586	first strand
Strand 2	B	597	602	anti-parallel
Strand 3	B	627	631	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	651	661	parallel
Strand 3	B	641	648	anti-parallel
Strand 4	B	608	613	anti-parallel
Strand 5	B	616	622	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	675	679	first strand
Strand 2	B	682	695	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	712	first strand
Strand 2	B	682	695	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	735	first strand
Strand 2	B	716	723	anti-parallel
Strand 3	B	682	695	anti-parallel
Strand 4	B	701	712	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	735	first strand
Strand 2	B	716	723	anti-parallel
Strand 3	B	682	695	anti-parallel
Strand 4	B	675	679	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AG9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AG9