Analysis of interatomic Contacts of Structural Units in PDB entry:
5AGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AGA entry

There is 1 chain in PDB entry 5AGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 67LEU 891
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5AGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 74Right-handed 310
Helix 2
2
A
77 86Right-handed alpha
Helix 3
3
A
93 102Right-handed alpha
Helix 4
4
A
120 136Right-handed alpha
Helix 5
5
A
146 162Right-handed alpha
Helix 6
6
A
163 165Right-handed 310
Helix 7
7
A
180 184Right-handed 310
Helix 8
8
A
191 204Right-handed alpha
Helix 9
9
A
206 208Right-handed 310
Helix 10
10
A
217 222Right-handed 310
Helix 11
11
A
228 244Right-handed alpha
Helix 12
12
A
245 248Right-handed 310
Helix 13
13
A
270 278Right-handed alpha
Helix 14
14
A
325 336Right-handed alpha
Helix 15
15
A
346 367Right-handed alpha
Helix 16
16
A
383 396Right-handed alpha
Helix 17
17
A
402 409Right-handed alpha
Helix 18
18
A
421 434Right-handed alpha
Helix 19
19
A
443 448Right-handed alpha
Helix 20
20
A
470 479Right-handed alpha
Helix 21
21
A
500 510Right-handed alpha
Helix 22
22
A
528 541Right-handed alpha
Helix 23
23
A
546 557Right-handed alpha
Helix 24
24
A
580 592Right-handed alpha
Helix 25
25
A
612 621Right-handed alpha
Helix 26
26
A
624 639Right-handed alpha
Helix 27
27
A
647 654Right-handed alpha
Helix 28
28
A
665 675Right-handed alpha
Helix 29
29
A
677 688Right-handed alpha
Helix 30
30
A
690 699Right-handed alpha
Helix 31
31
A
711 729Right-handed alpha
Helix 32
32
A
733 742Right-handed alpha
Helix 33
33
A
744 769Right-handed alpha
Helix 34
34
A
771 779Right-handed alpha
Helix 35
35
A
780 788Right-handed alpha
Helix 36
36
A
790 795Right-handed 310
Helix 37
37
A
795 799Right-handed 310
Helix 38
38
A
803 812Right-handed alpha
Helix 39
39
A
817 823Right-handed alpha
Helix 40
40
A
825 835Right-handed alpha
Helix 41
41
A
871 890Right-handed alpha
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There are 4 sheets in PDB entry 5AGA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
186 190parallel
Strand 3
A
139 144parallel
Strand 4
A
210 215parallel
Strand 5
A
260 265parallel
Strand 6
A
111 114parallel
Strand 7
A
281 284parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
292 298anti-parallel
Strand 4
A
490 496parallel
Strand 5
A
456 459parallel
Strand 6
A
340 343parallel
Strand 7
A
439 442parallel
Strand 8
A
413 416parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
467 468anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
608 611anti-parallel
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