Analysis of interatomic Contacts of Structural Units in PDB entry:
5AGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AGV entry

There are 8 chains in PDB entry 5AGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 10	GLY 402
B	LEU 10	GLY 402
C	LEU 5	LEU 5
C	LEU 7	LEU 7
C	GLY 11	GLY 11
D	LEU 5	LEU 5
D	LEU 7	LEU 7
D	GLY 11	GLY 11

There are 22 helices in PDB entry 5AGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	39	42	Right-handed 310
Helix 3	AA3	A	83	93	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	140	153	Right-handed alpha
Helix 6	AA6	A	161	164	Right-handed 310
Helix 7	AA7	A	208	219	Right-handed alpha
Helix 8	AA8	A	230	234	Right-handed 310
Helix 9	AA9	A	261	265	Right-handed 310
Helix 10	AB1	A	277	288	Right-handed alpha
Helix 11	AB2	A	289	291	Right-handed 310
Helix 12	AB3	A	336	347	Right-handed alpha
Helix 13	AB4	B	19	33	Right-handed alpha
Helix 14	AB5	B	39	42	Right-handed 310
Helix 15	AB6	B	83	93	Right-handed alpha
Helix 16	AB7	B	141	153	Right-handed alpha
Helix 17	AB8	B	161	164	Right-handed 310
Helix 18	AB9	B	210	215	Right-handed alpha
Helix 19	AC1	B	261	265	Right-handed 310
Helix 20	AC2	B	277	288	Right-handed alpha
Helix 21	AC3	B	289	295	Right-handed 310
Helix 22	AC4	B	336	347	Right-handed alpha

There are 10 sheets in PDB entry 5AGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	14	18	anti-parallel
Strand 3	A	97	103	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	114	119	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	53	58	anti-parallel
Strand 4	A	63	70	anti-parallel
Strand 5	A	247	252	anti-parallel
Strand 6	A	239	244	anti-parallel
Strand 7	A	224	227	anti-parallel
Strand 8	A	135	139	anti-parallel
Strand 9	A	194	195	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	207	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	175	181	anti-parallel
Strand 4	A	185	192	anti-parallel
Strand 5	A	391	395	anti-parallel
Strand 6	A	363	368	anti-parallel
Strand 7	A	351	356	anti-parallel
Strand 8	A	271	276	anti-parallel
Strand 9	A	325	328	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	384	385	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	323	first strand
Strand 2	A	305	312	anti-parallel
Strand 3	A	297	302	anti-parallel
Strand 4	A	331	335	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	14	18	anti-parallel
Strand 3	B	97	103	anti-parallel
Strand 4	B	106	111	anti-parallel
Strand 5	B	114	119	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	82	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	53	59	anti-parallel
Strand 4	B	63	70	anti-parallel
Strand 5	B	247	252	anti-parallel
Strand 6	B	239	244	anti-parallel
Strand 7	B	223	227	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	194	195	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	207	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	185	192	anti-parallel
Strand 5	B	391	395	anti-parallel
Strand 6	B	363	367	anti-parallel
Strand 7	B	351	356	anti-parallel
Strand 8	B	271	276	anti-parallel
Strand 9	B	325	327	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	384	385	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	323	first strand
Strand 2	B	305	312	anti-parallel
Strand 3	B	297	302	anti-parallel
Strand 4	B	331	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AGV