Analysis of interatomic Contacts of Structural Units in PDB entry:
5AGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AGX entry

There are 14 chains in PDB entry 5AGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8PRO 204
B
 GLY 8PRO 204
C
 ILE 1ILE 1
C
 ILE 3GLN 5
C
 LEU 7ARG 8
C
 ILE 10ASP 12
C
 PHE 14ASN 15
C
 TYR 17ARG 21
D
 ILE 1ILE 1
D
 ILE 3GLN 5
D
 LEU 7ARG 8
D
 ILE 10ASP 12
D
 PHE 14ASN 15
D
 TYR 17ARG 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5AGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 26Right-handed alpha
Helix 2
2
A
90 108Right-handed alpha
Helix 3
3
A
109 113Right-handed 310
Helix 4
4
A
114 120Right-handed alpha
Helix 5
5
A
125 138Right-handed alpha
Helix 6
6
A
143 164Right-handed alpha
Helix 7
7
A
168 185Right-handed alpha
Helix 8
8
A
185 192Right-handed alpha
Helix 9
9
A
193 203Right-handed alpha
Helix 10
10
B
10 26Right-handed alpha
Helix 11
11
B
90 108Right-handed alpha
Helix 12
12
B
109 113Right-handed 310
Helix 13
13
B
114 120Right-handed alpha
Helix 14
14
B
125 138Right-handed alpha
Helix 15
15
B
143 164Right-handed alpha
Helix 16
16
B
167 185Right-handed alpha
Helix 17
17
B
185 192Right-handed alpha
Helix 18
18
B
193 203Right-handed alpha
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There are no sheets in PDB entry 5AGX
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il