Analysis of interatomic Contacts of Structural Units in PDB entry:
5AGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AGY entry

There are 2 chains in PDB entry 5AGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 219
B
 ASP 3GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5AGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
41 48Right-handed alpha
Helix 3
3
A
66 78Right-handed alpha
Helix 4
4
A
88 116Right-handed alpha
Helix 5
5
A
117 140Right-handed alpha
Helix 6
6
A
151 158Right-handed alpha
Helix 7
7
A
159 162Right-handed 310
Helix 8
8
A
163 172Right-handed alpha
Helix 9
9
A
174 179Right-handed alpha
Helix 10
10
A
179 191Right-handed alpha
Helix 11
11
A
192 197Right-handed alpha
Helix 12
12
A
201 216Right-handed alpha
Helix 13
13
B
13 27Right-handed alpha
Helix 14
14
B
41 48Right-handed alpha
Helix 15
15
B
66 78Right-handed alpha
Helix 16
16
B
88 116Right-handed alpha
Helix 17
17
B
117 140Right-handed alpha
Helix 18
18
B
151 158Right-handed alpha
Helix 19
19
B
159 162Right-handed 310
Helix 20
20
B
163 172Right-handed alpha
Helix 21
21
B
174 179Right-handed alpha
Helix 22
22
B
179 191Right-handed alpha
Helix 23
23
B
192 197Right-handed alpha
Helix 24
24
B
201 216Right-handed alpha
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There are 2 sheets in PDB entry 5AGY. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
5 9parallel
Strand 3
A
56 59anti-parallel
Strand 4
A
62 65anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
5 9parallel
Strand 3
B
56 59anti-parallel
Strand 4
B
62 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il