Analysis of interatomic Contacts of Structural Units in PDB entry:
5AH0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AH0 entry

There are 2 chains in PDB entry 5AH0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 16ILE 400
B
 MET 16ASN 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5AH0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 54Right-handed alpha
Helix 2
2
A
68 82Right-handed alpha
Helix 3
3
A
88 96Right-handed alpha
Helix 4
4
A
130 145Right-handed alpha
Helix 5
5
A
146 152Right-handed alpha
Helix 6
6
A
158 162Right-handed 310
Helix 7
7
A
181 186Right-handed alpha
Helix 8
8
A
187 206Right-handed alpha
Helix 9
9
A
207 211Right-handed 310
Helix 10
10
A
217 221Right-handed 310
Helix 11
11
A
229 239Right-handed alpha
Helix 12
12
A
241 246Right-handed alpha
Helix 13
13
A
249 254Right-handed alpha
Helix 14
14
A
255 266Right-handed alpha
Helix 15
15
A
302 310Right-handed alpha
Helix 16
16
A
323 327Right-handed 310
Helix 17
17
A
335 338Right-handed 310
Helix 18
18
A
373 377Right-handed 310
Helix 19
19
A
384 396Right-handed alpha
Helix 20
20
B
46 54Right-handed alpha
Helix 21
21
B
68 82Right-handed alpha
Helix 22
22
B
88 96Right-handed alpha
Helix 23
23
B
130 145Right-handed alpha
Helix 24
24
B
146 152Right-handed alpha
Helix 25
25
B
158 162Right-handed 310
Helix 26
26
B
181 186Right-handed alpha
Helix 27
27
B
187 206Right-handed alpha
Helix 28
28
B
207 211Right-handed 310
Helix 29
29
B
217 221Right-handed 310
Helix 30
30
B
229 239Right-handed alpha
Helix 31
31
B
241 246Right-handed alpha
Helix 32
32
B
249 254Right-handed alpha
Helix 33
33
B
255 266Right-handed alpha
Helix 34
34
B
302 310Right-handed alpha
Helix 35
35
B
323 327Right-handed 310
Helix 36
36
B
335 338Right-handed 310
Helix 37
37
B
373 377Right-handed 310
Helix 38
38
B
384 396Right-handed alpha
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There are 6 sheets in PDB entry 5AH0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
21 24parallel
Strand 3
A
123 128parallel
Strand 4
A
168 174parallel
Strand 5
A
273 277parallel
Strand 6
A
361 363parallel
Strand 7
A
349 351parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
100 104anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
367 368parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
21 24parallel
Strand 3
B
123 128parallel
Strand 4
B
168 174parallel
Strand 5
B
273 277parallel
Strand 6
B
361 363parallel
Strand 7
B
349 351parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
100 104anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 280first strand
Strand 2
B
367 368parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il