Analysis of interatomic Contacts of Structural Units in PDB entry:
5AH4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AH4 entry

There are 8 chains in PDB entry 5AH4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9PRO 396
B
 THR 9PRO 396
C
 LEU 5LEU 5
C
 LEU 7LEU 7
C
 GLY 11GLY 11
D
 LEU 5LEU 5
D
 LEU 7LEU 7
D
 GLY 11GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5AH4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
81 91Right-handed alpha
Helix 3
3
A
120 124Right-handed 310
Helix 4
4
A
138 151Right-handed alpha
Helix 5
5
A
159 162Right-handed 310
Helix 6
6
A
206 215Right-handed alpha
Helix 7
7
A
259 263Right-handed 310
Helix 8
8
A
275 286Right-handed alpha
Helix 9
9
A
287 293Right-handed 310
Helix 10
10
A
334 345Right-handed alpha
Helix 11
11
B
16 30Right-handed alpha
Helix 12
12
B
37 40Right-handed 310
Helix 13
13
B
81 90Right-handed alpha
Helix 14
14
B
139 151Right-handed alpha
Helix 15
15
B
159 162Right-handed 310
Helix 16
16
B
206 216Right-handed alpha
Helix 17
17
B
259 263Right-handed 310
Helix 18
18
B
275 287Right-handed alpha
Helix 19
19
B
288 293Right-handed 310
Helix 20
20
B
334 343Right-handed alpha
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There are 10 sheets in PDB entry 5AH4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
112 117anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
52 57anti-parallel
Strand 4
A
61 67anti-parallel
Strand 5
A
245 250anti-parallel
Strand 6
A
237 242anti-parallel
Strand 7
A
222 225anti-parallel
Strand 8
A
133 137anti-parallel
Strand 9
A
192 193anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 205first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
173 179anti-parallel
Strand 4
A
183 190anti-parallel
Strand 5
A
386 390anti-parallel
Strand 6
A
361 365anti-parallel
Strand 7
A
349 354anti-parallel
Strand 8
A
269 274anti-parallel
Strand 9
A
323 326anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
379 380anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 321first strand
Strand 2
A
303 310anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
329 333anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
12 15anti-parallel
Strand 3
B
96 101anti-parallel
Strand 4
B
104 109anti-parallel
Strand 5
B
112 117anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 80first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
52 57anti-parallel
Strand 4
B
61 67anti-parallel
Strand 5
B
245 250anti-parallel
Strand 6
B
237 242anti-parallel
Strand 7
B
221 225anti-parallel
Strand 8
B
135 138anti-parallel
Strand 9
B
192 193anti-parallel
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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 205first strand
Strand 2
B
164 170anti-parallel
Strand 3
B
173 179anti-parallel
Strand 4
B
183 190anti-parallel
Strand 5
B
386 390anti-parallel
Strand 6
B
361 366anti-parallel
Strand 7
B
349 354anti-parallel
Strand 8
B
269 274anti-parallel
Strand 9
B
323 326anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
379 380anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 321first strand
Strand 2
B
303 310anti-parallel
Strand 3
B
295 300anti-parallel
Strand 4
B
329 333anti-parallel
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