Analysis of interatomic Contacts of Structural Units in PDB entry:
5AHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AHO entry

There is 1 chain in PDB entry 5AHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ARG 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5AHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 22Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
51 62Right-handed alpha
Helix 4
4
A
124 130Right-handed 310
Helix 5
5
A
130 134Right-handed 310
Helix 6
6
A
157 171Right-handed alpha
Helix 7
7
A
186 197Right-handed alpha
Helix 8
8
A
204 215Right-handed alpha
Helix 9
9
A
223 227Right-handed 310
Helix 10
10
A
235 237Right-handed 310
Helix 11
11
A
238 247Right-handed alpha
Helix 12
12
A
278 290Right-handed alpha
Helix 13
13
A
306 310Right-handed 310
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There are 3 sheets in PDB entry 5AHO. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
11 13anti-parallel
Strand 3
A
26 28parallel
Strand 4
A
48 50parallel
Strand 5
A
69 71parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
89 96anti-parallel
Strand 3
A
104 110anti-parallel
Strand 4
A
113 117anti-parallel
Strand 5
A
141 144parallel
Strand 6
A
294 296parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
201 202parallel
Strand 3
A
229 233parallel
Strand 4
A
176 181parallel
Strand 5
A
251 256parallel
Strand 6
A
268 271parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il