Analysis of interatomic Contacts of Structural Units in PDB entry:
5AIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AIU entry

There are 5 chains in PDB entry 5AIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 131ILE 259
B
 ALA 2ASN 151
C
 MET 1GLY 76
E
 ALA 2ASN 151
F
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5AIU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 149Right-handed alpha
Helix 2
2
A
164 174Right-handed alpha
Helix 3
3
A
207 214Right-handed alpha
Helix 4
4
A
229 239Right-handed alpha
Helix 5
5
B
5 18Right-handed alpha
Helix 6
6
B
89 92Right-handed 310
Helix 7
7
B
100 114Right-handed alpha
Helix 8
8
B
122 132Right-handed alpha
Helix 9
9
B
132 149Right-handed alpha
Helix 10
10
C
22 35Right-handed alpha
Helix 11
11
C
37 39Right-handed 310
Helix 12
12
E
5 18Right-handed alpha
Helix 13
13
E
89 92Right-handed 310
Helix 14
14
E
100 114Right-handed alpha
Helix 15
15
E
122 132Right-handed alpha
Helix 16
16
E
132 149Right-handed alpha
Helix 17
17
F
22 35Right-handed alpha
Helix 18
18
F
37 39Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5AIU. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, EA, FA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
189 191anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
218 220anti-parallel
Strand 3
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 28first strand
Strand 2
B
31 40anti-parallel
Strand 3
B
51 57anti-parallel
Strand 4
B
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
23 28first strand
Strand 2
E
31 40anti-parallel
Strand 3
E
51 57anti-parallel
Strand 4
E
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 71parallel
Strand 4
F
41 45anti-parallel
Strand 5
F
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il