Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJ3 entry

There are 34 chains in PDB entry 5AJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
A 3 C 962
B
ASN 55GLY 274
C
LYS 36ILE 167
E
SER 88THR 430
F
PRO 2LYS 124
G
SER 35TRP 242
I
THR 70ARG 397
J
PRO 61TRP 189
K
SER 61LEU 196
L
ALA 31LYS 139
N
TYR 28TRP 128
O
GLN 65GLY 239
P
ARG 10ASP 126
Q
SER 2ILE 110
R
SER 47GLU 143
T
UNK 54UNK 67
U
ALA 2CYS 87
a
ARG 65UNK 356
b
ALA 2GLY 136
c
PRO 2THR 170
d
ARG 27LYS 203
e
UNK 28UNK 407
f
VAL 78SER 176
g
UNK 52LEU 397
h
PRO 285ASN 387
i
LEU 4ALA 102
j
ALA 2LYS 214
k
ARG 51ALA 325
m
ALA 2VAL 117
n
LYS 128GLN 199
o
GLU 55UNK 677
p
TYR 51VAL 238
s
UNK 2360UNK 2375
z
UNK 692UNK 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are228 helices in PDB entry 5AJ3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
55 64Right-handed alpha
Helix 2
2
B
65 68Right-handed 310
Helix 3
3
B
73 78Right-handed 310
Helix 4
4
B
79 86Right-handed alpha
Helix 5
5
B
116 137Right-handed alpha
Helix 6
6
B
150 161Right-handed alpha
Helix 7
7
B
177 182Right-handed alpha
Helix 8
8
B
205 214Right-handed alpha
Helix 9
9
B
241 273Right-handed alpha
Helix 10
10
C
58 62Right-handed 310
Helix 11
11
C
72 76Right-handed 310
Helix 12
12
C
81 100Right-handed alpha
Helix 13
13
C
128 148Right-handed alpha
Helix 14
14
E
94 104Right-handed alpha
Helix 15
15
E
161 185Right-handed alpha
Helix 16
16
E
263 277Right-handed alpha
Helix 17
17
E
286 288Right-handed 310
Helix 18
18
E
317 328Right-handed alpha
Helix 19
19
E
341 355Right-handed alpha
Helix 20
20
E
358 367Right-handed alpha
Helix 21
21
E
407 415Right-handed alpha
Helix 22
22
F
14 33Right-handed alpha
Helix 23
23
F
71 73Right-handed 310
Helix 24
24
F
74 85Right-handed alpha
Helix 25
25
G
47 53Right-handed alpha
Helix 26
26
G
57 70Right-handed alpha
Helix 27
27
G
88 97Right-handed alpha
Helix 28
28
G
103 128Right-handed alpha
Helix 29
29
G
130 137Right-handed alpha
Helix 30
30
G
140 151Right-handed alpha
Helix 31
31
G
175 194Right-handed alpha
Helix 32
32
G
200 214Right-handed alpha
Helix 33
33
G
217 233Right-handed alpha
Helix 34
34
G
234 239Right-handed 310
Helix 35
35
I
70 93Right-handed alpha
Helix 36
36
I
100 112Right-handed alpha
Helix 37
37
I
127 132Right-handed alpha
Helix 38
38
I
150 154Right-handed 310
Helix 39
39
I
155 176Right-handed alpha
Helix 40
40
I
202 211Right-handed alpha
Helix 41
41
I
215 231Right-handed alpha
Helix 42
42
I
235 245Right-handed alpha
Helix 43
43
I
301 305Right-handed alpha
Helix 44
44
I
307 321Right-handed alpha
Helix 45
45
I
337 353Right-handed alpha
Helix 46
46
I
358 368Right-handed alpha
Helix 47
47
J
84 102Right-handed alpha
Helix 48
48
J
150 163Right-handed alpha
Helix 49
49
K
122 125Right-handed 310
Helix 50
50
K
126 144Right-handed alpha
Helix 51
51
K
159 170Right-handed alpha
Helix 52
52
L
32 39Right-handed alpha
Helix 53
53
N
31 47Right-handed alpha
Helix 54
54
N
47 59Right-handed alpha
Helix 55
55
N
64 78Right-handed alpha
Helix 56
56
N
79 83Right-handed 310
Helix 57
57
N
83 87Right-handed 310
Helix 58
58
N
107 116Right-handed alpha
Helix 59
59
O
74 78Right-handed 310
Helix 60
60
O
87 94Right-handed alpha
Helix 61
61
O
95 99Right-handed 310
Helix 62
62
O
100 117Right-handed alpha
Helix 63
63
O
125 147Right-handed alpha
Helix 64
64
O
150 174Right-handed alpha
Helix 65
65
O
175 186Right-handed alpha
Helix 66
66
O
201 239Right-handed alpha
Helix 67
67
P
69 78Right-handed alpha
Helix 68
68
P
84 95Right-handed alpha
Helix 69
69
P
100 126Right-handed alpha
Helix 70
70
R
77 84Right-handed alpha
Helix 71
71
R
94 99Right-handed alpha
Helix 72
72
R
101 118Right-handed alpha
Helix 73
73
R
127 133Right-handed 310
Helix 74
74
U
18 34Right-handed alpha
Helix 75
75
U
34 42Right-handed alpha
Helix 76
76
U
47 75Right-handed alpha
Helix 77
77
U
76 80Right-handed 310
Helix 78
78
a
71 83Right-handed alpha
Helix 79
79
a
85 90Right-handed alpha
Helix 80
80
a
106 126Right-handed alpha
Helix 81
81
a
144 149Right-handed alpha
Helix 82
82
a
184 196Right-handed alpha
Helix 83
83
a
206 209Right-handed 310
Helix 84
84
a
210 220Right-handed alpha
Helix 85
85
a
222 234Right-handed alpha
Helix 86
86
a
238 255Right-handed alpha
Helix 87
87
a
257 262Right-handed 310
Helix 88
88
a
266 276Right-handed alpha
Helix 89
89
a
280 290Right-handed alpha
Helix 90
90
a
292 306Right-handed alpha
Helix 91
91
a
310 319Right-handed alpha
Helix 92
92
a
322 334Right-handed alpha
Helix 93
93
a
337 356Right-handed alpha
Helix 94
94
b
11 22Right-handed alpha
Helix 95
95
b
29 38Right-handed alpha
Helix 96
96
b
65 78Right-handed alpha
Helix 97
97
b
94 108Right-handed alpha
Helix 98
98
b
113 128Right-handed alpha
Helix 99
99
c
7 12Right-handed 310
Helix 100
100
c
13 19Right-handed alpha
Helix 101
101
c
41 50Right-handed alpha
Helix 102
102
c
50 59Right-handed alpha
Helix 103
103
c
94 106Right-handed alpha
Helix 104
104
c
109 122Right-handed alpha
Helix 105
105
c
156 159Right-handed 310
Helix 106
106
c
160 170Right-handed alpha
Helix 107
107
d
35 40Right-handed alpha
Helix 108
108
d
49 87Right-handed alpha
Helix 109
109
d
88 164Right-handed alpha
Helix 110
110
d
172 183Right-handed alpha
Helix 111
111
e
28 43Right-handed alpha
Helix 112
112
e
49 63Right-handed alpha
Helix 113
113
e
69 80Right-handed alpha
Helix 114
114
e
85 98Right-handed alpha
Helix 115
115
e
104 118Right-handed alpha
Helix 116
116
e
120 134Right-handed alpha
Helix 117
117
e
139 153Right-handed alpha
Helix 118
118
e
155 169Right-handed alpha
Helix 119
119
e
174 192Right-handed alpha
Helix 120
120
e
196 208Right-handed alpha
Helix 121
121
e
209 211Right-handed 310
Helix 122
122
e
213 229Right-handed alpha
Helix 123
123
e
232 237Right-handed alpha
Helix 124
124
e
247 261Right-handed alpha
Helix 125
125
e
273 291Right-handed alpha
Helix 126
126
e
294 308Right-handed alpha
Helix 127
127
e
354 364Right-handed alpha
Helix 128
128
e
366 381Right-handed alpha
Helix 129
129
e
382 406Right-handed alpha
Helix 130
130
f
80 88Right-handed alpha
Helix 131
131
f
88 93Right-handed alpha
Helix 132
132
f
131 135Right-handed 310
Helix 133
133
g
70 78Right-handed alpha
Helix 134
134
g
83 94Right-handed alpha
Helix 135
135
g
101 113Right-handed alpha
Helix 136
136
g
134 147Right-handed alpha
Helix 137
137
g
157 162Right-handed alpha
Helix 138
138
g
179 194Right-handed alpha
Helix 139
139
g
195 201Right-handed alpha
Helix 140
140
g
220 231Right-handed alpha
Helix 141
141
g
234 250Right-handed alpha
Helix 142
142
g
264 269Right-handed alpha
Helix 143
143
g
286 294Right-handed alpha
Helix 144
144
g
323 337Right-handed alpha
Helix 145
145
g
348 362Right-handed alpha
Helix 146
146
g
367 371Right-handed 310
Helix 147
147
g
372 384Right-handed alpha
Helix 148
148
g
386 396Right-handed alpha
Helix 149
149
h
288 300Right-handed alpha
Helix 150
150
h
314 318Right-handed 310
Helix 151
151
h
319 323Right-handed 310
Helix 152
152
h
326 331Right-handed 310
Helix 153
153
h
337 352Right-handed alpha
Helix 154
154
h
357 375Right-handed alpha
Helix 155
155
h
376 382Right-handed alpha
Helix 156
156
i
5 20Right-handed alpha
Helix 157
157
i
30 38Right-handed alpha
Helix 158
158
i
41 44Right-handed 310
Helix 159
159
i
45 50Right-handed alpha
Helix 160
160
i
54 68Right-handed alpha
Helix 161
161
i
73 89Right-handed alpha
Helix 162
162
j
10 27Right-handed alpha
Helix 163
163
j
29 35Right-handed alpha
Helix 164
164
j
54 61Right-handed alpha
Helix 165
165
j
83 89Right-handed alpha
Helix 166
166
j
146 151Right-handed alpha
Helix 167
167
j
167 182Right-handed alpha
Helix 168
168
k
57 61Right-handed 310
Helix 169
169
k
67 72Right-handed alpha
Helix 170
170
k
104 109Right-handed alpha
Helix 171
171
k
113 116Right-handed 310
Helix 172
172
k
117 129Right-handed alpha
Helix 173
173
k
137 140Right-handed 310
Helix 174
174
k
141 149Right-handed alpha
Helix 175
175
k
167 171Right-handed 310
Helix 176
176
k
180 182Right-handed 310
Helix 177
177
k
185 197Right-handed alpha
Helix 178
178
k
216 236Right-handed alpha
Helix 179
179
k
239 244Right-handed alpha
Helix 180
180
k
258 276Right-handed alpha
Helix 181
181
k
281 288Right-handed alpha
Helix 182
182
k
288 304Right-handed alpha
Helix 183
183
k
307 323Right-handed alpha
Helix 184
184
m
45 59Right-handed alpha
Helix 185
185
m
67 90Right-handed alpha
Helix 186
186
m
91 93Right-handed 310
Helix 187
187
m
100 111Right-handed alpha
Helix 188
188
n
129 150Right-handed alpha
Helix 189
189
n
150 181Right-handed alpha
Helix 190
190
o
68 76Right-handed alpha
Helix 191
191
o
99 124Right-handed alpha
Helix 192
192
o
137 141Right-handed 310
Helix 193
193
o
153 164Right-handed alpha
Helix 194
194
o
167 180Right-handed alpha
Helix 195
195
o
185 198Right-handed alpha
Helix 196
196
o
200 215Right-handed alpha
Helix 197
197
o
220 234Right-handed alpha
Helix 198
198
o
238 249Right-handed alpha
Helix 199
199
o
260 275Right-handed alpha
Helix 200
200
o
277 291Right-handed alpha
Helix 201
201
o
295 310Right-handed alpha
Helix 202
202
o
315 329Right-handed alpha
Helix 203
203
o
336 349Right-handed alpha
Helix 204
204
o
355 368Right-handed alpha
Helix 205
205
o
371 385Right-handed alpha
Helix 206
206
o
390 405Right-handed alpha
Helix 207
207
o
410 430Right-handed alpha
Helix 208
208
o
433 446Right-handed alpha
Helix 209
209
o
457 469Right-handed alpha
Helix 210
210
o
475 489Right-handed alpha
Helix 211
211
o
492 506Right-handed alpha
Helix 212
212
o
510 524Right-handed alpha
Helix 213
213
o
531 541Right-handed alpha
Helix 214
214
o
546 559Right-handed alpha
Helix 215
215
o
575 585Right-handed alpha
Helix 216
216
o
593 606Right-handed alpha
Helix 217
217
o
651 660Right-handed alpha
Helix 218
218
o
666 676Right-handed alpha
Helix 219
219
p
55 61Right-handed alpha
Helix 220
220
p
61 68Right-handed alpha
Helix 221
221
p
105 110Right-handed alpha
Helix 222
222
p
119 125Right-handed alpha
Helix 223
223
p
136 141Right-handed alpha
Helix 224
224
p
143 160Right-handed alpha
Helix 225
225
p
190 196Right-handed alpha
Helix 226
226
p
209 220Right-handed alpha
Helix 227
227
s
2360 2374Right-handed alpha
Helix 228
228
z
698 708Right-handed alpha
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There are 32 sheets in PDB entry 5AJ3. Click on sheet of interest to get list of strands forming it: BA, BB, CA, EA, EB, EC, ED, FA, GE, IA, IB, JA, JB, JC, NA, KA, KB, KC, LA, PA, QA, QB, CB, FC, FB, GA, GB, GC, GD, JD, JE, PB,

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
90 93first strand
Strand 2
B
112 115anti-parallel
Strand 3
B
105 109anti-parallel
Strand 4
b
61 62parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
164 166first strand
Strand 2
B
141 144parallel
Strand 3
B
191 194parallel
Strand 4
B
218 222parallel
Strand 5
B
233 236parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
70 71first strand
Strand 2
C
109 113parallel
Strand 3
C
116 124anti-parallel
Strand 4
C
151 158parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
139 140first strand
Strand 2
E
158 159anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
219 232first strand
Strand 2
E
236 248anti-parallel
Strand 3
E
253 261anti-parallel
Strand 4
E
280 281anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
294 298first strand
Strand 2
E
301 307anti-parallel
Strand 3
E
332 338anti-parallel
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There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
381 385first strand
Strand 2
E
369 373anti-parallel
Strand 3
a
101 105anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 53first strand
Strand 2
F
56 69anti-parallel
Strand 3
F
4 10anti-parallel
Strand 4
F
88 95anti-parallel
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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
156 163first strand
Strand 2
G
166 173anti-parallel
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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
198 200first strand
Strand 2
I
246 248anti-parallel
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There are 6 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
261 262first strand
Strand 2
I
269 277anti-parallel
Strand 3
I
280 287anti-parallel
Strand 4
I
328 334anti-parallel
Strand 5
I
294 296parallel
Strand 6
I
299 300anti-parallel
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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
64 66first strand
Strand 2
o
62 64anti-parallel
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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
106 109first strand
Strand 2
J
131 149anti-parallel
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There are 2 strands in JC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
114 121first strand
Strand 2
J
131 149anti-parallel
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There are 2 strands in NA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
124 125first strand
Strand 2
J
131 149anti-parallel
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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
k
206 211first strand
Strand 2
k
173 178anti-parallel
Strand 3
k
151 159anti-parallel
Strand 4
J
169 178anti-parallel
Strand 5
J
72 82anti-parallel
Strand 6
J
131 149anti-parallel
Strand 7
N
124 125anti-parallel
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There are 7 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
k
206 211first strand
Strand 2
k
173 178anti-parallel
Strand 3
k
151 159anti-parallel
Strand 4
J
169 178anti-parallel
Strand 5
J
72 82anti-parallel
Strand 6
J
131 149anti-parallel
Strand 7
J
114 121anti-parallel
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There are 6 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
108 113first strand
Strand 2
K
96 102anti-parallel
Strand 3
K
87 93anti-parallel
Strand 4
K
148 154parallel
Strand 5
K
173 179parallel
Strand 6
U
11 13anti-parallel
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There are 6 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
57 62first strand
Strand 2
L
107 111anti-parallel
Strand 3
L
123 125anti-parallel
Strand 4
L
90 94parallel
Strand 5
L
78 85anti-parallel
Strand 6
L
57 62first strand
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There are 9 strands in PA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
82 83first strand
Strand 2
P
17 25parallel
Strand 3
P
30 38anti-parallel
Strand 4
P
49 54anti-parallel
Strand 5
P
63 68anti-parallel
Strand 6
a
154 159parallel
Strand 7
a
171 174anti-parallel
Strand 8
a
179 182anti-parallel
Strand 9
a
140 143anti-parallel
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There are 6 strands in QA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
12 22first strand
Strand 2
Q
63 68anti-parallel
Strand 3
Q
77 86anti-parallel
Strand 4
Q
41 52parallel
Strand 5
Q
25 36anti-parallel
Strand 6
Q
12 22anti-parallel
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There are 3 strands in QB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
91 92first strand
Strand 2
Q
99 101anti-parallel
Strand 3
Q
104 105anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
63 68first strand
Strand 2
c
29 34parallel
Strand 3
c
75 79anti-parallel
Strand 4
c
85 89anti-parallel
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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
f
123 126first strand
Strand 2
f
112 116anti-parallel
Strand 3
f
99 108anti-parallel
Strand 4
f
140 147anti-parallel
Strand 5
f
167 170anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
f
151 152first strand
Strand 2
f
161 162anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
66 69first strand
Strand 2
g
96 99anti-parallel
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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
150 154first strand
Strand 2
g
257 262parallel
Strand 3
g
303 308parallel
Strand 4
g
121 126parallel
Strand 5
g
340 343parallel
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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
168 170first strand
Strand 2
g
176 178anti-parallel
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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
g
206 208first strand
Strand 2
g
214 216anti-parallel
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There are 5 strands in JD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
j
123 125first strand
Strand 2
j
111 120anti-parallel
Strand 3
j
94 103anti-parallel
Strand 4
j
79 82anti-parallel
Strand 5
j
139 141anti-parallel
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There are 2 strands in JE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
j
163 165first strand
Strand 2
j
190 192anti-parallel
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There are 2 strands in PB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
p
95 96first strand
Strand 2
p
99 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il