Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJ8 entry

There are 2 chains in PDB entry 5AJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 158SER 325
B
 GLY 158SER 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5AJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
248 253Right-handed 310
Helix 2
2
A
263 271Right-handed alpha
Helix 3
3
A
276 281Right-handed alpha
Helix 4
4
A
282 286Right-handed 310
Helix 5
5
A
305 309Right-handed 310
Helix 6
6
B
248 253Right-handed 310
Helix 7
7
B
263 271Right-handed alpha
Helix 8
8
B
276 281Right-handed alpha
Helix 9
9
B
282 286Right-handed 310
Helix 10
10
B
305 309Right-handed 310
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There are 10 sheets in PDB entry 5AJ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
176 180parallel
Strand 3
A
195 199parallel
Strand 4
A
212 216parallel
Strand 5
A
232 234parallel
Strand 6
A
288 289parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
182 189anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
182 189parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
239 243parallel
Strand 3
A
219 227parallel
Strand 4
A
202 210parallel
Strand 5
A
182 189parallel
Strand 6
A
169 171parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
239 243parallel
Strand 3
A
219 227parallel
Strand 4
A
202 210parallel
Strand 5
A
182 189parallel
Strand 6
A
164 165anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
176 180parallel
Strand 3
B
195 199parallel
Strand 4
B
212 216parallel
Strand 5
B
232 234parallel
Strand 6
B
288 289parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
182 189anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
182 189parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
239 243parallel
Strand 3
B
219 227parallel
Strand 4
B
202 210parallel
Strand 5
B
182 189parallel
Strand 6
B
169 171parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
239 243parallel
Strand 3
B
219 227parallel
Strand 4
B
202 210parallel
Strand 5
B
182 189parallel
Strand 6
B
164 165anti-parallel
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