Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJD entry

There are 12 chains in PDB entry 5AJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1568LEU 2078
B
 TYR 420ILE 469
C
 ARG 1568LEU 2078
D
 TYR 420ILE 469
E
 ARG 1568LEU 2078
F
 ASN 425ASP 467
G
 ARG 1568LEU 2078
H
 TYR 420ASP 467
I
 ARG 1568LEU 2078
J
 TYR 420ASP 467
K
 ARG 1568LEU 2078
L
 GLY 424ILE 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are138 helices in PDB entry 5AJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1568 1584Right-handed alpha
Helix 2
2
A
1591 1601Right-handed alpha
Helix 3
3
A
1608 1628Right-handed alpha
Helix 4
4
A
1639 1653Right-handed alpha
Helix 5
5
A
1659 1681Right-handed alpha
Helix 6
6
A
1689 1707Right-handed alpha
Helix 7
7
A
1719 1740Right-handed alpha
Helix 8
8
A
1749 1758Right-handed alpha
Helix 9
9
A
1762 1768Right-handed alpha
Helix 10
10
A
1773 1790Right-handed alpha
Helix 11
11
A
1802 1819Right-handed alpha
Helix 12
12
A
1821 1834Right-handed alpha
Helix 13
13
A
1840 1849Right-handed alpha
Helix 14
14
A
1889 1899Right-handed alpha
Helix 15
15
A
1901 1917Right-handed alpha
Helix 16
16
A
1931 1952Right-handed alpha
Helix 17
17
A
1963 1975Right-handed alpha
Helix 18
18
A
1977 1992Right-handed alpha
Helix 19
19
A
1996 2012Right-handed alpha
Helix 20
20
A
2019 2032Right-handed alpha
Helix 21
21
A
2041 2055Right-handed alpha
Helix 22
22
A
2071 2078Right-handed alpha
Helix 23
23
B
426 439Right-handed alpha
Helix 24
24
C
1568 1584Right-handed alpha
Helix 25
25
C
1591 1601Right-handed alpha
Helix 26
26
C
1608 1628Right-handed alpha
Helix 27
27
C
1639 1653Right-handed alpha
Helix 28
28
C
1659 1681Right-handed alpha
Helix 29
29
C
1689 1707Right-handed alpha
Helix 30
30
C
1718 1740Right-handed alpha
Helix 31
31
C
1749 1758Right-handed alpha
Helix 32
32
C
1762 1768Right-handed alpha
Helix 33
33
C
1774 1790Right-handed alpha
Helix 34
34
C
1801 1819Right-handed alpha
Helix 35
35
C
1821 1834Right-handed alpha
Helix 36
36
C
1840 1848Right-handed alpha
Helix 37
37
C
1889 1899Right-handed alpha
Helix 38
38
C
1901 1916Right-handed alpha
Helix 39
39
C
1931 1952Right-handed alpha
Helix 40
40
C
1963 1975Right-handed alpha
Helix 41
41
C
1977 1991Right-handed alpha
Helix 42
42
C
1996 2011Right-handed alpha
Helix 43
43
C
2019 2035Right-handed alpha
Helix 44
44
C
2041 2055Right-handed alpha
Helix 45
45
C
2072 2078Right-handed alpha
Helix 46
46
D
426 439Right-handed alpha
Helix 47
47
E
1569 1586Right-handed alpha
Helix 48
48
E
1591 1603Right-handed alpha
Helix 49
49
E
1608 1629Right-handed alpha
Helix 50
50
E
1637 1653Right-handed alpha
Helix 51
51
E
1659 1682Right-handed alpha
Helix 52
52
E
1689 1707Right-handed alpha
Helix 53
53
E
1718 1739Right-handed alpha
Helix 54
54
E
1749 1758Right-handed alpha
Helix 55
55
E
1761 1769Right-handed alpha
Helix 56
56
E
1774 1790Right-handed alpha
Helix 57
57
E
1802 1819Right-handed alpha
Helix 58
58
E
1821 1835Right-handed alpha
Helix 59
59
E
1840 1848Right-handed alpha
Helix 60
60
E
1891 1899Right-handed alpha
Helix 61
61
E
1904 1918Right-handed alpha
Helix 62
62
E
1931 1953Right-handed alpha
Helix 63
63
E
1963 1975Right-handed alpha
Helix 64
64
E
1977 1990Right-handed alpha
Helix 65
65
E
1996 2011Right-handed alpha
Helix 66
66
E
2021 2035Right-handed alpha
Helix 67
67
E
2041 2054Right-handed alpha
Helix 68
68
E
2072 2078Right-handed alpha
Helix 69
69
F
426 439Right-handed alpha
Helix 70
70
G
1568 1587Right-handed alpha
Helix 71
71
G
1591 1603Right-handed alpha
Helix 72
72
G
1608 1628Right-handed alpha
Helix 73
73
G
1637 1653Right-handed alpha
Helix 74
74
G
1659 1681Right-handed alpha
Helix 75
75
G
1689 1712Right-handed alpha
Helix 76
76
G
1716 1740Right-handed alpha
Helix 77
77
G
1749 1758Right-handed alpha
Helix 78
78
G
1761 1768Right-handed alpha
Helix 79
79
G
1774 1790Right-handed alpha
Helix 80
80
G
1802 1819Right-handed alpha
Helix 81
81
G
1821 1834Right-handed alpha
Helix 82
82
G
1840 1848Right-handed alpha
Helix 83
83
G
1889 1899Right-handed alpha
Helix 84
84
G
1903 1917Right-handed alpha
Helix 85
85
G
1931 1949Right-handed alpha
Helix 86
86
G
1963 1975Right-handed alpha
Helix 87
87
G
1977 1991Right-handed alpha
Helix 88
88
G
1996 2011Right-handed alpha
Helix 89
89
G
2021 2032Right-handed alpha
Helix 90
90
G
2041 2053Right-handed alpha
Helix 91
91
G
2070 2075Right-handed 310
Helix 92
92
H
426 439Right-handed alpha
Helix 93
93
I
1568 1584Right-handed alpha
Helix 94
94
I
1590 1600Right-handed alpha
Helix 95
95
I
1608 1628Right-handed alpha
Helix 96
96
I
1636 1654Right-handed alpha
Helix 97
97
I
1659 1682Right-handed alpha
Helix 98
98
I
1689 1707Right-handed alpha
Helix 99
99
I
1718 1739Right-handed alpha
Helix 100
100
I
1749 1758Right-handed alpha
Helix 101
101
I
1761 1768Right-handed alpha
Helix 102
102
I
1774 1788Right-handed alpha
Helix 103
103
I
1802 1819Right-handed alpha
Helix 104
104
I
1821 1835Right-handed alpha
Helix 105
105
I
1840 1848Right-handed alpha
Helix 106
106
I
1889 1899Right-handed alpha
Helix 107
107
I
1904 1917Right-handed alpha
Helix 108
108
I
1931 1952Right-handed alpha
Helix 109
109
I
1963 1975Right-handed alpha
Helix 110
110
I
1977 1991Right-handed alpha
Helix 111
111
I
1996 2010Right-handed alpha
Helix 112
112
I
2020 2032Right-handed alpha
Helix 113
113
I
2041 2053Right-handed alpha
Helix 114
114
I
2070 2078Right-handed alpha
Helix 115
115
J
426 439Right-handed alpha
Helix 116
116
K
1568 1584Right-handed alpha
Helix 117
117
K
1592 1600Right-handed alpha
Helix 118
118
K
1608 1630Right-handed alpha
Helix 119
119
K
1639 1653Right-handed alpha
Helix 120
120
K
1659 1681Right-handed alpha
Helix 121
121
K
1689 1707Right-handed alpha
Helix 122
122
K
1718 1739Right-handed alpha
Helix 123
123
K
1749 1758Right-handed alpha
Helix 124
124
K
1761 1768Right-handed alpha
Helix 125
125
K
1774 1790Right-handed alpha
Helix 126
126
K
1801 1819Right-handed alpha
Helix 127
127
K
1821 1834Right-handed alpha
Helix 128
128
K
1840 1848Right-handed alpha
Helix 129
129
K
1889 1899Right-handed alpha
Helix 130
130
K
1904 1918Right-handed alpha
Helix 131
131
K
1931 1953Right-handed alpha
Helix 132
132
K
1963 1975Right-handed alpha
Helix 133
133
K
1977 1991Right-handed alpha
Helix 134
134
K
1996 2011Right-handed alpha
Helix 135
135
K
2018 2035Right-handed alpha
Helix 136
136
K
2041 2054Right-handed alpha
Helix 137
137
K
2071 2076Right-handed alpha
Helix 138
138
L
426 439Right-handed alpha
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There is 1 sheet ( GA) in PDB entry 5AJD.

There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
1654 1655first strand
Strand 2
H
446 447anti-parallel
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