Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJH entry

There are 3 chains in PDB entry 5AJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18LEU 218
B
 SER 18ALA 216
C
 SER 18ALA 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5AJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
52 65Right-handed alpha
Helix 3
3
A
81 87Right-handed 310
Helix 4
4
A
92 110Right-handed alpha
Helix 5
5
A
121 134Right-handed alpha
Helix 6
6
A
135 141Right-handed alpha
Helix 7
7
A
164 166Right-handed 310
Helix 8
8
A
176 181Right-handed 310
Helix 9
9
A
186 191Right-handed 310
Helix 10
10
A
192 198Right-handed alpha
Helix 11
11
A
198 218Right-handed alpha
Helix 12
12
B
52 65Right-handed alpha
Helix 13
13
B
81 87Right-handed 310
Helix 14
14
B
92 110Right-handed alpha
Helix 15
15
B
121 134Right-handed alpha
Helix 16
16
B
135 140Right-handed alpha
Helix 17
17
B
164 166Right-handed 310
Helix 18
18
B
176 181Right-handed 310
Helix 19
19
B
188 191Right-handed 310
Helix 20
20
B
192 198Right-handed alpha
Helix 21
21
B
198 211Right-handed alpha
Helix 22
22
C
22 27Right-handed alpha
Helix 23
23
C
52 68Right-handed alpha
Helix 24
24
C
81 87Right-handed 310
Helix 25
25
C
92 110Right-handed alpha
Helix 26
26
C
121 134Right-handed alpha
Helix 27
27
C
135 141Right-handed alpha
Helix 28
28
C
164 166Right-handed 310
Helix 29
29
C
176 181Right-handed 310
Helix 30
30
C
186 191Right-handed 310
Helix 31
31
C
192 198Right-handed alpha
Helix 32
32
C
198 211Right-handed alpha
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There are 4 sheets in PDB entry 5AJH. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
35 40parallel
Strand 3
A
114 120parallel
Strand 4
A
142 148parallel
Strand 5
A
168 171parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
B
185 186anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
35 40parallel
Strand 3
B
114 120parallel
Strand 4
B
142 148parallel
Strand 5
B
168 171parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
35 40parallel
Strand 3
C
114 120parallel
Strand 4
C
142 148parallel
Strand 5
C
168 171parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il