Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJL entry

There are 2 chains in PDB entry 5AJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20LYS 655
B
 THR 20LYS 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5AJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 41Right-handed alpha
Helix 2
2
A
46 54Right-handed alpha
Helix 3
3
A
77 85Right-handed 310
Helix 4
4
A
92 103Right-handed alpha
Helix 5
5
A
142 158Right-handed alpha
Helix 6
6
A
171 176Right-handed alpha
Helix 7
7
A
183 189Right-handed alpha
Helix 8
8
A
199 207Right-handed alpha
Helix 9
9
A
211 224Right-handed alpha
Helix 10
10
A
318 333Right-handed alpha
Helix 11
11
A
350 378Right-handed alpha
Helix 12
12
A
384 389Right-handed alpha
Helix 13
13
A
392 397Right-handed alpha
Helix 14
14
A
398 402Right-handed 310
Helix 15
15
A
407 421Right-handed alpha
Helix 16
16
A
426 430Right-handed 310
Helix 17
17
A
434 445Right-handed alpha
Helix 18
18
A
448 463Right-handed alpha
Helix 19
19
A
464 479Right-handed alpha
Helix 20
20
A
482 500Right-handed alpha
Helix 21
21
A
502 519Right-handed alpha
Helix 22
22
A
531 538Right-handed alpha
Helix 23
23
A
539 551Right-handed alpha
Helix 24
24
A
552 557Right-handed alpha
Helix 25
25
A
601 610Right-handed alpha
Helix 26
26
A
614 621Right-handed alpha
Helix 27
27
A
631 640Right-handed alpha
Helix 28
28
B
27 41Right-handed alpha
Helix 29
29
B
46 54Right-handed alpha
Helix 30
30
B
77 83Right-handed 310
Helix 31
31
B
92 103Right-handed alpha
Helix 32
32
B
142 158Right-handed alpha
Helix 33
33
B
171 176Right-handed alpha
Helix 34
34
B
177 181Right-handed 310
Helix 35
35
B
183 189Right-handed alpha
Helix 36
36
B
199 224Right-handed alpha
Helix 37
37
B
318 333Right-handed alpha
Helix 38
38
B
350 378Right-handed alpha
Helix 39
39
B
384 389Right-handed alpha
Helix 40
40
B
392 397Right-handed alpha
Helix 41
41
B
398 402Right-handed 310
Helix 42
42
B
407 421Right-handed alpha
Helix 43
43
B
426 430Right-handed 310
Helix 44
44
B
434 462Right-handed alpha
Helix 45
45
B
464 479Right-handed alpha
Helix 46
46
B
482 500Right-handed alpha
Helix 47
47
B
502 519Right-handed alpha
Helix 48
48
B
531 538Right-handed alpha
Helix 49
49
B
539 551Right-handed alpha
Helix 50
50
B
552 557Right-handed alpha
Helix 51
51
B
601 610Right-handed alpha
Helix 52
52
B
614 622Right-handed alpha
Helix 53
53
B
631 640Right-handed alpha
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There are 8 sheets in PDB entry 5AJL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
125 129anti-parallel
Strand 5
A
134 137anti-parallel
Strand 6
A
162 166parallel
Strand 7
A
193 197parallel
Strand 8
A
255 257parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
72 75anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 266first strand
Strand 2
A
269 275anti-parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
294 296anti-parallel
Strand 5
A
339 341parallel
Strand 6
A
348 349anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
572 579anti-parallel
Strand 3
A
561 567anti-parallel
Strand 4
A
596 599parallel
Strand 5
A
625 628anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
106 109anti-parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
125 130anti-parallel
Strand 5
B
133 137anti-parallel
Strand 6
B
162 166parallel
Strand 7
B
193 197parallel
Strand 8
B
255 257parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
72 75anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 266first strand
Strand 2
B
269 275anti-parallel
Strand 3
B
285 289anti-parallel
Strand 4
B
294 296anti-parallel
Strand 5
B
339 341parallel
Strand 6
B
348 349anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 587first strand
Strand 2
B
572 579anti-parallel
Strand 3
B
561 567anti-parallel
Strand 4
B
596 600parallel
Strand 5
B
624 628anti-parallel
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