Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJQ entry

There are 2 chains in PDB entry 5AJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24ALA 312
B
 HIS 25ALA 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5AJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed alpha
Helix 2
2
A
75 88Right-handed alpha
Helix 3
3
A
118 125Right-handed alpha
Helix 4
4
A
130 151Right-handed alpha
Helix 5
5
A
159 161Right-handed 310
Helix 6
6
A
177 184Right-handed alpha
Helix 7
7
A
200 204Right-handed 310
Helix 8
8
A
216 233Right-handed alpha
Helix 9
9
A
241 252Right-handed alpha
Helix 10
10
A
259 263Right-handed 310
Helix 11
11
A
264 275Right-handed alpha
Helix 12
12
A
284 290Right-handed alpha
Helix 13
13
A
300 312Right-handed alpha
Helix 14
14
B
31 35Right-handed alpha
Helix 15
15
B
75 88Right-handed alpha
Helix 16
16
B
118 125Right-handed alpha
Helix 17
17
B
130 151Right-handed alpha
Helix 18
18
B
159 161Right-handed 310
Helix 19
19
B
176 181Right-handed alpha
Helix 20
20
B
200 204Right-handed 310
Helix 21
21
B
216 233Right-handed alpha
Helix 22
22
B
241 252Right-handed alpha
Helix 23
23
B
259 263Right-handed 310
Helix 24
24
B
264 275Right-handed alpha
Helix 25
25
B
284 290Right-handed alpha
Helix 26
26
B
300 312Right-handed alpha
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There are 4 sheets in PDB entry 5AJQ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
96 102parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
61 67anti-parallel
Strand 5
A
50 55anti-parallel
Strand 6
A
36 42anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
163 165anti-parallel
Strand 3
A
171 173anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
105 111anti-parallel
Strand 5
B
96 102anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
163 165anti-parallel
Strand 3
B
171 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il