Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJT entry

There are 4 chains in PDB entry 5AJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24GLN 240
B
 PRO 24GLN 240
C
 PRO 24GLN 240
D
 PRO 24GLN 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5AJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 56Right-handed alpha
Helix 2
2
A
67 82Right-handed alpha
Helix 3
3
A
93 95Right-handed 310
Helix 4
4
A
115 120Right-handed alpha
Helix 5
5
A
127 141Right-handed alpha
Helix 6
6
A
154 170Right-handed alpha
Helix 7
7
A
186 199Right-handed alpha
Helix 8
8
A
215 226Right-handed alpha
Helix 9
9
A
229 237Right-handed alpha
Helix 10
10
A
238 240Right-handed 310
Helix 11
11
B
39 56Right-handed alpha
Helix 12
12
B
67 82Right-handed alpha
Helix 13
13
B
93 95Right-handed 310
Helix 14
14
B
115 120Right-handed alpha
Helix 15
15
B
127 141Right-handed alpha
Helix 16
16
B
154 170Right-handed alpha
Helix 17
17
B
186 199Right-handed alpha
Helix 18
18
B
215 226Right-handed alpha
Helix 19
19
B
229 237Right-handed alpha
Helix 20
20
C
40 56Right-handed alpha
Helix 21
21
C
67 82Right-handed alpha
Helix 22
22
C
93 95Right-handed 310
Helix 23
23
C
115 120Right-handed alpha
Helix 24
24
C
127 141Right-handed alpha
Helix 25
25
C
154 170Right-handed alpha
Helix 26
26
C
186 199Right-handed alpha
Helix 27
27
C
215 226Right-handed alpha
Helix 28
28
C
229 237Right-handed alpha
Helix 29
29
C
238 240Right-handed 310
Helix 30
30
D
39 56Right-handed alpha
Helix 31
31
D
67 82Right-handed alpha
Helix 32
32
D
93 95Right-handed 310
Helix 33
33
D
115 120Right-handed alpha
Helix 34
34
D
127 141Right-handed alpha
Helix 35
35
D
154 170Right-handed alpha
Helix 36
36
D
186 199Right-handed alpha
Helix 37
37
D
215 226Right-handed alpha
Helix 38
38
D
229 237Right-handed alpha
Helix 39
39
D
238 240Right-handed 310
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There are 8 sheets in PDB entry 5AJT. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
86 91parallel
Strand 3
A
59 62parallel
Strand 4
A
27 31parallel
Strand 5
A
147 150parallel
Strand 6
A
176 180parallel
Strand 7
A
210 213parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
112 113anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
86 91parallel
Strand 3
B
59 62parallel
Strand 4
B
27 31parallel
Strand 5
B
147 150parallel
Strand 6
B
176 180parallel
Strand 7
B
210 213parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
112 113anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 125first strand
Strand 2
C
86 91parallel
Strand 3
C
59 62parallel
Strand 4
C
27 31parallel
Strand 5
C
147 150parallel
Strand 6
C
176 180parallel
Strand 7
C
210 213parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
112 113anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 125first strand
Strand 2
D
86 91parallel
Strand 3
D
59 62parallel
Strand 4
D
27 31parallel
Strand 5
D
147 150parallel
Strand 6
D
176 180parallel
Strand 7
D
210 213parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 106first strand
Strand 2
D
112 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il