Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJU entry

There is 1 chain in PDB entry 5AJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24GLN 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 5AJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 56Right-handed alpha
Helix 2
2
A
67 82Right-handed alpha
Helix 3
3
A
93 95Right-handed 310
Helix 4
4
A
115 120Right-handed alpha
Helix 5
5
A
127 141Right-handed alpha
Helix 6
6
A
154 170Right-handed alpha
Helix 7
7
A
186 199Right-handed alpha
Helix 8
8
A
215 225Right-handed alpha
Helix 9
9
A
228 236Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5AJU. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
86 91parallel
Strand 3
A
58 62parallel
Strand 4
A
26 31parallel
Strand 5
A
147 150parallel
Strand 6
A
176 180parallel
Strand 7
A
210 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
112 113anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il