Analysis of interatomic Contacts of Structural Units in PDB entry:
5AKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AKA entry

There are 34 chains in PDB entry 5AKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 ALA 1LYS 56
1
 ALA 1LYS 54
2
 MET 1LYS 46
3
 PRO 1ALA 64
4
 MET 1GLY 38
5
 GLY 328ALA 436
6
 ALA 450ALA 457
7
 A 101 U 174
A
 G 2 C 118
B
 G 1 U 2903
C
 VAL 3ARG 269
D
 MET 1ALA 209
E
 MET 1ALA 201
F
 ALA 1LYS 178
G
 SER 1LYS 176
H
 MET 1GLU 149
I
 ALA 1ASP 141
J
 MET 1LEU 140
K
 ILE 2VAL 122
L
 LEU 3GLU 144
M
 MET 1MET 136
N
 MET 1GLU 127
O
 MET 1PHE 117
P
 SER 1ASN 114
Q
 ALA 1ALA 117
R
 MET 1ALA 103
S
 MET 1ARG 110
T
 MET 1ALA 99
U
 ALA 1ILE 102
V
 MET 1ALA 94
W
 ALA 1GLU 84
X
 MET 1ALA 63
Y
 ALA 1GLU 58
Z
 MET 1LYS 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 5AKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
0
14 20Right-handed 310
Helix 2
2
2
8 13Right-handed 310
Helix 3
3
2
19 23Right-handed 310
Helix 4
4
2
24 35Right-handed alpha
Helix 5
5
3
5 13Right-handed alpha
Helix 6
6
3
51 56Right-handed alpha
Helix 7
7
5
330 340Right-handed alpha
Helix 8
8
5
349 353Right-handed 310
Helix 9
9
5
361 367Right-handed alpha
Helix 10
10
5
368 370Right-handed 310
Helix 11
11
5
374 382Right-handed alpha
Helix 12
12
5
384 390Right-handed alpha
Helix 13
13
5
391 394Right-handed 310
Helix 14
14
5
395 407Right-handed alpha
Helix 15
15
5
409 425Right-handed alpha
Helix 16
16
C
131 134Right-handed 310
Helix 17
17
C
197 201Right-handed 310
Helix 18
18
D
61 67Right-handed alpha
Helix 19
19
E
24 36Right-handed alpha
Helix 20
20
E
97 103Right-handed alpha
Helix 21
21
E
107 112Right-handed alpha
Helix 22
22
E
133 139Right-handed alpha
Helix 23
23
E
156 161Right-handed 310
Helix 24
24
E
176 181Right-handed alpha
Helix 25
25
F
3 9Right-handed alpha
Helix 26
26
F
50 61Right-handed alpha
Helix 27
27
F
93 101Right-handed alpha
Helix 28
28
G
57 81Right-handed alpha
Helix 29
29
G
136 150Right-handed alpha
Helix 30
30
H
25 35Right-handed alpha
Helix 31
31
H
40 49Right-handed alpha
Helix 32
32
H
51 60Right-handed alpha
Helix 33
33
H
62 67Right-handed alpha
Helix 34
34
H
67 72Right-handed alpha
Helix 35
35
H
96 101Right-handed alpha
Helix 36
36
H
102 104Right-handed 310
Helix 37
37
H
111 115Right-handed 310
Helix 38
38
I
24 29Right-handed alpha
Helix 39
39
I
33 49Right-handed alpha
Helix 40
40
I
74 84Right-handed alpha
Helix 41
41
I
102 113Right-handed alpha
Helix 42
42
I
120 136Right-handed alpha
Helix 43
43
J
24 28Right-handed 310
Helix 44
44
J
29 34Right-handed alpha
Helix 45
45
J
66 71Right-handed 310
Helix 46
46
J
89 94Right-handed alpha
Helix 47
47
J
100 109Right-handed 310
Helix 48
48
J
114 119Right-handed alpha
Helix 49
49
K
114 118Right-handed 310
Helix 50
50
L
128 133Right-handed alpha
Helix 51
51
M
43 52Right-handed alpha
Helix 52
52
M
109 118Right-handed alpha
Helix 53
53
N
16 31Right-handed alpha
Helix 54
54
N
37 53Right-handed alpha
Helix 55
55
N
61 65Right-handed 310
Helix 56
56
N
73 82Right-handed alpha
Helix 57
57
N
82 87Right-handed alpha
Helix 58
58
O
8 12Right-handed 310
Helix 59
59
O
14 18Right-handed 310
Helix 60
60
O
68 83Right-handed alpha
Helix 61
61
O
101 112Right-handed alpha
Helix 62
62
Q
5 18Right-handed alpha
Helix 63
63
Q
25 30Right-handed alpha
Helix 64
64
Q
33 68Right-handed alpha
Helix 65
65
Q
69 72Right-handed 310
Helix 66
66
Q
74 84Right-handed alpha
Helix 67
67
Q
93 95Right-handed 310
Helix 68
68
Q
96 101Right-handed alpha
Helix 69
69
Q
101 114Right-handed alpha
Helix 70
70
S
13 24Right-handed alpha
Helix 71
71
S
41 57Right-handed alpha
Helix 72
72
T
6 10Right-handed 310
Helix 73
73
T
40 50Right-handed alpha
Helix 74
74
V
13 23Right-handed alpha
Helix 75
75
V
43 48Right-handed alpha
Helix 76
76
V
53 57Right-handed 310
Helix 77
77
X
18 21Right-handed 310
Helix 78
78
X
22 27Right-handed alpha
Helix 79
79
X
42 46Right-handed 310
Helix 80
80
X
46 48Right-handed 310
Helix 81
81
X
49 60Right-handed alpha
Helix 82
82
Y
17 22Right-handed alpha
Helix 83
83
Y
23 27Right-handed alpha
Helix 84
84
Y
40 42Right-handed 310
Helix 85
85
Y
43 50Right-handed alpha
Helix 86
86
Z
53 58Right-handed alpha
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There are 17 sheets in PDB entry 5AKA. Click on sheet of interest to get list of strands forming it: 1A, FA, GA, GB, GC, HA, HB, IA, IB, KA, KB, KC, MA, MB, PA, VA, YA,

There are 2 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
9 10first strand
Strand 2
1
23 24anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 128first strand
Strand 2
F
154 155anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
15 19first strand
Strand 2
G
22 26anti-parallel
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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
120 122first strand
Strand 2
G
131 134anti-parallel
Strand 3
G
82 88anti-parallel
Strand 4
G
161 163anti-parallel
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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
95 96first strand
Strand 2
G
101 104anti-parallel
Strand 3
G
112 115anti-parallel
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
84 85first strand
Strand 2
H
89 90anti-parallel
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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 130first strand
Strand 2
H
142 144anti-parallel
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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
8 12first strand
Strand 2
I
54 60anti-parallel
Strand 3
I
66 70anti-parallel
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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
98 101first strand
Strand 2
I
137 140parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
7 9first strand
Strand 2
K
18 20anti-parallel
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There are 3 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
39 42first strand
Strand 2
K
57 60anti-parallel
Strand 3
K
86 87anti-parallel
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There are 2 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
69 70first strand
Strand 2
K
76 77anti-parallel
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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
39 41first strand
Strand 2
M
93 95anti-parallel
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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
62 63first strand
Strand 2
M
103 104anti-parallel
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There are 2 strands in PA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
62 63first strand
Strand 2
P
73 74anti-parallel
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There are 3 strands in VA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
28 31first strand
Strand 2
V
86 92parallel
Strand 3
V
74 79anti-parallel
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There are 2 strands in YA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
6 7first strand
Strand 2
Y
34 35anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il