Analysis of interatomic Contacts of Structural Units in PDB entry:
5AKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AKP entry

There are 2 chains in PDB entry 5AKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 12ARG 631
B
 VAL 12ASP 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5AKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
54 59Right-handed alpha
Helix 4
4
A
62 67Right-handed alpha
Helix 5
5
A
128 140Right-handed alpha
Helix 6
6
A
144 160Right-handed alpha
Helix 7
7
A
196 200Right-handed 310
Helix 8
8
A
201 211Right-handed alpha
Helix 9
9
A
249 260Right-handed alpha
Helix 10
10
A
290 337Right-handed alpha
Helix 11
11
A
341 355Right-handed alpha
Helix 12
12
A
377 389Right-handed alpha
Helix 13
13
A
393 400Right-handed alpha
Helix 14
14
A
408 413Right-handed alpha
Helix 15
15
A
419 424Right-handed alpha
Helix 16
16
A
490 499Right-handed alpha
Helix 17
17
A
500 525Right-handed alpha
Helix 18
18
A
548 556Right-handed alpha
Helix 19
19
A
558 563Right-handed alpha
Helix 20
20
A
576 590Right-handed alpha
Helix 21
21
B
12 16Right-handed 310
Helix 22
22
B
46 51Right-handed alpha
Helix 23
23
B
54 59Right-handed alpha
Helix 24
24
B
63 66Right-handed 310
Helix 25
25
B
125 142Right-handed alpha
Helix 26
26
B
144 160Right-handed alpha
Helix 27
27
B
196 200Right-handed 310
Helix 28
28
B
201 211Right-handed alpha
Helix 29
29
B
249 260Right-handed alpha
Helix 30
30
B
290 337Right-handed alpha
Helix 31
31
B
341 355Right-handed alpha
Helix 32
32
B
377 389Right-handed alpha
Helix 33
33
B
393 400Right-handed alpha
Helix 34
34
B
408 413Right-handed alpha
Helix 35
35
B
419 424Right-handed alpha
Helix 36
36
B
490 499Right-handed alpha
Helix 37
37
B
500 525Right-handed alpha
Helix 38
38
B
548 556Right-handed alpha
Helix 39
39
B
567 570Right-handed 310
Helix 40
40
B
576 590Right-handed alpha
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There are 10 sheets in PDB entry 5AKP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
224 225anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
82 88anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
274 283anti-parallel
Strand 4
A
164 170anti-parallel
Strand 5
A
176 183anti-parallel
Strand 6
A
193 195anti-parallel
Strand 7
A
448 452parallel
Strand 8
A
479 482anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 373first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
437 443anti-parallel
Strand 4
A
425 429anti-parallel
Strand 5
A
404 406anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 547first strand
Strand 2
A
530 534anti-parallel
Strand 3
A
625 629anti-parallel
Strand 4
A
608 615anti-parallel
Strand 5
A
593 598anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
224 225anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
113 119anti-parallel
Strand 4
B
102 108anti-parallel
Strand 5
B
82 88anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
263 271anti-parallel
Strand 3
B
274 283anti-parallel
Strand 4
B
164 170anti-parallel
Strand 5
B
176 183anti-parallel
Strand 6
B
193 195anti-parallel
Strand 7
B
448 452parallel
Strand 8
B
479 482anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 373first strand
Strand 2
B
360 365anti-parallel
Strand 3
B
437 443anti-parallel
Strand 4
B
425 429anti-parallel
Strand 5
B
404 406anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 547first strand
Strand 2
B
530 534anti-parallel
Strand 3
B
625 630anti-parallel
Strand 4
B
608 615anti-parallel
Strand 5
B
593 598anti-parallel
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