Analysis of interatomic Contacts of Structural Units in PDB entry:
5AL7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AL7 entry

There are 2 chains in PDB entry 5AL7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ARG 216
B
 SER 9ARG 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5AL7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 18Right-handed 310
Helix 2
2
A
78 88Right-handed alpha
Helix 3
3
A
93 111Right-handed alpha
Helix 4
4
A
123 127Right-handed 310
Helix 5
5
A
157 185Right-handed alpha
Helix 6
6
A
186 198Right-handed alpha
Helix 7
7
A
201 206Right-handed alpha
Helix 8
8
A
206 214Right-handed alpha
Helix 9
9
B
16 18Right-handed 310
Helix 10
10
B
78 88Right-handed alpha
Helix 11
11
B
93 111Right-handed alpha
Helix 12
12
B
157 194Right-handed alpha
Helix 13
13
B
195 201Right-handed alpha
Helix 14
14
B
201 215Right-handed alpha
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There are 2 sheets in PDB entry 5AL7. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 33first strand
Strand 2
A
41 52anti-parallel
Strand 3
A
57 64anti-parallel
Strand 4
A
67 77anti-parallel
Strand 5
A
146 155anti-parallel
Strand 6
A
133 139anti-parallel
Strand 7
A
114 119anti-parallel
Strand 8
A
20 33parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 33first strand
Strand 2
B
41 52anti-parallel
Strand 3
B
57 64anti-parallel
Strand 4
B
67 77anti-parallel
Strand 5
B
146 155anti-parallel
Strand 6
B
133 139anti-parallel
Strand 7
B
114 119anti-parallel
Strand 8
B
20 33parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il