Analysis of interatomic Contacts of Structural Units in PDB entry:
5AMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AMN entry

There are 3 chains in PDB entry 5AMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 700VAL 899
A
 GLU 901SER 904
A
 VAL 906VAL 1010
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5AMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
700 711Right-handed alpha
Helix 2
2
A
714 717Right-handed 310
Helix 3
3
A
720 722Right-handed 310
Helix 4
4
A
765 780Right-handed alpha
Helix 5
5
A
811 819Right-handed alpha
Helix 6
6
A
847 867Right-handed alpha
Helix 7
7
A
876 878Right-handed 310
Helix 8
8
A
914 918Right-handed 310
Helix 9
9
A
919 926Right-handed alpha
Helix 10
10
A
929 946Right-handed alpha
Helix 11
11
A
956 958Right-handed 310
Helix 12
12
A
959 966Right-handed alpha
Helix 13
13
A
977 988Right-handed alpha
Helix 14
14
A
991 995Right-handed 310
Helix 15
15
A
997 1009Right-handed alpha
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There are 4 sheets in PDB entry 5AMN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 732first strand
Strand 2
A
736 744anti-parallel
Strand 3
A
752 760anti-parallel
Strand 4
A
801 805anti-parallel
Strand 5
A
790 794anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
897 898anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 883first strand
Strand 2
A
887 890anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 906first strand
Strand 2
A
927 928anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il