Analysis of interatomic Contacts of Structural Units in PDB entry:
5AMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AMO entry

There are 2 chains in PDB entry 5AMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 211	PHE 477
B	ARG 210	ALA 480

There are 4 helices in PDB entry 5AMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	211	226	Right-handed alpha
Helix 2	2	A	279	286	Right-handed alpha
Helix 3	3	B	210	226	Right-handed alpha
Helix 4	4	B	279	286	Right-handed alpha

There are 20 sheets in PDB entry 5AMO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	468	476	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	468	476	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	460	464	anti-parallel
Strand 3	A	468	476	anti-parallel
Strand 4	A	237	241	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	460	464	anti-parallel
Strand 3	A	468	476	anti-parallel
Strand 4	A	230	233	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	273	277	anti-parallel
Strand 4	A	290	293	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	319	324	anti-parallel
Strand 4	A	329	335	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	360	first strand
Strand 2	A	363	369	anti-parallel
Strand 3	A	376	382	anti-parallel
Strand 4	A	389	398	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	411	415	anti-parallel
Strand 3	A	423	429	anti-parallel
Strand 4	A	434	436	parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	411	415	anti-parallel
Strand 3	A	423	429	anti-parallel
Strand 4	A	440	441	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	436	first strand
Strand 2	A	423	429	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	468	477	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	468	477	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	455	first strand
Strand 2	B	460	464	anti-parallel
Strand 3	B	468	477	anti-parallel
Strand 4	B	237	241	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	455	first strand
Strand 2	B	460	464	anti-parallel
Strand 3	B	468	477	anti-parallel
Strand 4	B	229	233	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	262	266	anti-parallel
Strand 3	B	273	277	anti-parallel
Strand 4	B	290	293	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	319	324	anti-parallel
Strand 4	B	329	335	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	359	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	376	382	anti-parallel
Strand 4	B	389	398	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	411	415	anti-parallel
Strand 3	B	422	429	anti-parallel
Strand 4	B	434	436	parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	411	415	anti-parallel
Strand 3	B	422	429	anti-parallel
Strand 4	B	440	442	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	436	first strand
Strand 2	B	422	429	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AMO