Analysis of interatomic Contacts of Structural Units in PDB entry:
5AMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AMQ entry

There are 4 chains in PDB entry 5AMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 1745
B
 U 1 U 16
C
 A 1 C 10
c
 G 9 A 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 5AMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
18 46Right-handed alpha
Helix 3
3
A
54 63Right-handed alpha
Helix 4
4
A
99 119Right-handed alpha
Helix 5
5
A
144 149Right-handed alpha
Helix 6
6
A
158 172Right-handed alpha
Helix 7
7
A
175 183Right-handed alpha
Helix 8
8
A
198 202Right-handed 310
Helix 9
9
A
204 214Right-handed alpha
Helix 10
10
A
215 228Right-handed alpha
Helix 11
11
A
237 260Right-handed alpha
Helix 12
12
A
261 263Right-handed 310
Helix 13
13
A
273 292Right-handed alpha
Helix 14
14
A
297 301Right-handed 310
Helix 15
15
A
319 333Right-handed alpha
Helix 16
16
A
340 351Right-handed alpha
Helix 17
17
A
356 372Right-handed alpha
Helix 18
18
A
407 417Right-handed alpha
Helix 19
19
A
447 466Right-handed alpha
Helix 20
20
A
475 523Right-handed alpha
Helix 21
21
A
597 606Right-handed alpha
Helix 22
22
A
606 620Right-handed alpha
Helix 23
23
A
626 639Right-handed alpha
Helix 24
24
A
642 650Right-handed alpha
Helix 25
25
A
650 661Right-handed alpha
Helix 26
26
A
665 673Right-handed alpha
Helix 27
27
A
680 700Right-handed alpha
Helix 28
28
A
700 705Right-handed alpha
Helix 29
29
A
737 747Right-handed alpha
Helix 30
30
A
748 752Right-handed 310
Helix 31
31
A
758 781Right-handed alpha
Helix 32
32
A
795 813Right-handed alpha
Helix 33
33
A
816 825Right-handed alpha
Helix 34
34
A
831 834Right-handed 310
Helix 35
35
A
835 839Right-handed 310
Helix 36
36
A
849 872Right-handed alpha
Helix 37
37
A
893 900Right-handed alpha
Helix 38
38
A
911 921Right-handed alpha
Helix 39
39
A
928 940Right-handed alpha
Helix 40
40
A
964 985Right-handed alpha
Helix 41
41
A
995 1031Right-handed alpha
Helix 42
42
A
1038 1046Right-handed alpha
Helix 43
43
A
1071 1080Right-handed alpha
Helix 44
44
A
1084 1099Right-handed alpha
Helix 45
45
A
1106 1115Right-handed alpha
Helix 46
46
A
1123 1128Right-handed alpha
Helix 47
47
A
1148 1173Right-handed alpha
Helix 48
48
A
1201 1220Right-handed alpha
Helix 49
49
A
1252 1259Right-handed alpha
Helix 50
50
A
1267 1285Right-handed alpha
Helix 51
51
A
1288 1307Right-handed alpha
Helix 52
52
A
1317 1321Right-handed 310
Helix 53
53
A
1330 1334Right-handed 310
Helix 54
54
A
1340 1348Right-handed alpha
Helix 55
55
A
1350 1362Right-handed alpha
Helix 56
56
A
1366 1371Right-handed alpha
Helix 57
57
A
1373 1380Right-handed alpha
Helix 58
58
A
1381 1384Right-handed 310
Helix 59
59
A
1390 1403Right-handed alpha
Helix 60
60
A
1441 1453Right-handed alpha
Helix 61
61
A
1455 1467Right-handed alpha
Helix 62
62
A
1468 1472Right-handed 310
Helix 63
63
A
1477 1489Right-handed alpha
Helix 64
64
A
1491 1499Right-handed alpha
Helix 65
65
A
1502 1513Right-handed alpha
Helix 66
66
A
1520 1526Right-handed alpha
Helix 67
67
A
1527 1529Right-handed 310
Helix 68
68
A
1548 1562Right-handed alpha
Helix 69
69
A
1566 1578Right-handed alpha
Helix 70
70
A
1581 1593Right-handed alpha
Helix 71
71
A
1622 1632Right-handed alpha
Helix 72
72
A
1643 1660Right-handed alpha
Helix 73
73
A
1660 1677Right-handed alpha
Helix 74
74
A
1680 1697Right-handed alpha
Helix 75
75
A
1717 1729Right-handed alpha
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There are 11 sheets in PDB entry 5AMQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
88 95anti-parallel
Strand 3
A
124 131parallel
Strand 4
A
138 140anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 533anti-parallel
Strand 5
A
540 544anti-parallel
Strand 6
A
557 565anti-parallel
Strand 7
A
587 591anti-parallel
Strand 8
A
577 582anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 533anti-parallel
Strand 5
A
540 544anti-parallel
Strand 6
A
557 565anti-parallel
Strand 7
A
594 596parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 728first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
906 910anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
959 963first strand
Strand 2
A
944 949anti-parallel
Strand 3
A
1102 1104parallel
Strand 4
A
1136 1138anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1185first strand
Strand 2
A
1188 1197anti-parallel
Strand 3
A
1051 1060anti-parallel
Strand 4
A
1230 1232anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1235 1237first strand
Strand 2
A
1242 1244anti-parallel
Strand 3
A
1247 1249anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1594 1600first strand
Strand 2
A
1735 1740anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1606 1609first strand
Strand 2
A
1708 1711anti-parallel
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