Analysis of interatomic Contacts of Structural Units in PDB entry:
5AMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AMR entry

There are 3 chains in PDB entry 5AMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 1745
B
 U 1 U 16
C
 G 9 A 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 5AMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
18 46Right-handed alpha
Helix 3
3
A
54 63Right-handed alpha
Helix 4
4
A
99 113Right-handed alpha
Helix 5
5
A
113 121Right-handed alpha
Helix 6
6
A
142 149Right-handed alpha
Helix 7
7
A
158 172Right-handed alpha
Helix 8
8
A
175 183Right-handed alpha
Helix 9
9
A
198 203Right-handed 310
Helix 10
10
A
204 213Right-handed alpha
Helix 11
11
A
215 228Right-handed alpha
Helix 12
12
A
237 247Right-handed alpha
Helix 13
13
A
247 260Right-handed alpha
Helix 14
14
A
261 265Right-handed 310
Helix 15
15
A
273 292Right-handed alpha
Helix 16
16
A
297 301Right-handed 310
Helix 17
17
A
319 333Right-handed alpha
Helix 18
18
A
340 351Right-handed alpha
Helix 19
19
A
356 372Right-handed alpha
Helix 20
20
A
402 406Right-handed 310
Helix 21
21
A
407 417Right-handed alpha
Helix 22
22
A
447 466Right-handed alpha
Helix 23
23
A
475 501Right-handed alpha
Helix 24
24
A
502 523Right-handed alpha
Helix 25
25
A
598 620Right-handed alpha
Helix 26
26
A
626 640Right-handed alpha
Helix 27
27
A
642 660Right-handed alpha
Helix 28
28
A
665 673Right-handed alpha
Helix 29
29
A
680 700Right-handed alpha
Helix 30
30
A
700 705Right-handed alpha
Helix 31
31
A
713 722Right-handed alpha
Helix 32
32
A
737 747Right-handed alpha
Helix 33
33
A
748 751Right-handed 310
Helix 34
34
A
758 781Right-handed alpha
Helix 35
35
A
795 813Right-handed alpha
Helix 36
36
A
816 825Right-handed alpha
Helix 37
37
A
831 838Right-handed 310
Helix 38
38
A
849 870Right-handed alpha
Helix 39
39
A
892 900Right-handed alpha
Helix 40
40
A
911 921Right-handed alpha
Helix 41
41
A
928 940Right-handed alpha
Helix 42
42
A
964 985Right-handed alpha
Helix 43
43
A
995 1020Right-handed alpha
Helix 44
44
A
1020 1030Right-handed alpha
Helix 45
45
A
1039 1048Right-handed alpha
Helix 46
46
A
1071 1079Right-handed alpha
Helix 47
47
A
1084 1099Right-handed alpha
Helix 48
48
A
1106 1116Right-handed alpha
Helix 49
49
A
1123 1128Right-handed alpha
Helix 50
50
A
1148 1173Right-handed alpha
Helix 51
51
A
1201 1220Right-handed alpha
Helix 52
52
A
1252 1258Right-handed alpha
Helix 53
53
A
1259 1261Right-handed 310
Helix 54
54
A
1267 1285Right-handed alpha
Helix 55
55
A
1288 1307Right-handed alpha
Helix 56
56
A
1317 1321Right-handed 310
Helix 57
57
A
1325 1329Right-handed 310
Helix 58
58
A
1340 1348Right-handed alpha
Helix 59
59
A
1350 1365Right-handed alpha
Helix 60
60
A
1366 1370Right-handed 310
Helix 61
61
A
1373 1380Right-handed alpha
Helix 62
62
A
1381 1384Right-handed 310
Helix 63
63
A
1385 1389Right-handed 310
Helix 64
64
A
1390 1403Right-handed alpha
Helix 65
65
A
1441 1453Right-handed alpha
Helix 66
66
A
1455 1467Right-handed alpha
Helix 67
67
A
1468 1472Right-handed 310
Helix 68
68
A
1477 1489Right-handed alpha
Helix 69
69
A
1491 1498Right-handed alpha
Helix 70
70
A
1502 1513Right-handed alpha
Helix 71
71
A
1520 1526Right-handed alpha
Helix 72
72
A
1527 1529Right-handed 310
Helix 73
73
A
1548 1562Right-handed alpha
Helix 74
74
A
1566 1578Right-handed alpha
Helix 75
75
A
1581 1593Right-handed alpha
Helix 76
76
A
1622 1631Right-handed alpha
Helix 77
77
A
1643 1659Right-handed alpha
Helix 78
78
A
1661 1677Right-handed alpha
Helix 79
79
A
1680 1700Right-handed alpha
Helix 80
80
A
1717 1729Right-handed alpha
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There are 13 sheets in PDB entry 5AMR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
87 95anti-parallel
Strand 3
A
124 131parallel
Strand 4
A
138 140anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 533anti-parallel
Strand 5
A
540 544anti-parallel
Strand 6
A
556 565anti-parallel
Strand 7
A
586 591anti-parallel
Strand 8
A
577 583anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 533anti-parallel
Strand 5
A
540 544anti-parallel
Strand 6
A
556 565anti-parallel
Strand 7
A
594 597parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 728first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
906 910anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
961 963first strand
Strand 2
A
944 947anti-parallel
Strand 3
A
1102 1104parallel
Strand 4
A
1136 1138anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1185first strand
Strand 2
A
1188 1197anti-parallel
Strand 3
A
1051 1062anti-parallel
Strand 4
A
1223 1224anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1185first strand
Strand 2
A
1188 1197anti-parallel
Strand 3
A
1051 1062anti-parallel
Strand 4
A
1230 1232anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1223 1224first strand
Strand 2
A
1051 1062anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1235 1238first strand
Strand 2
A
1241 1244anti-parallel
Strand 3
A
1247 1249anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1594 1600first strand
Strand 2
A
1735 1740anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1606 1609first strand
Strand 2
A
1708 1711anti-parallel
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