Analysis of interatomic Contacts of Structural Units in PDB entry:
5ANM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ANM entry

There are 7 chains in PDB entry 5ANM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	THR 214
B	GLU 1	LYS 222
C	SER 2	THR 214
D	GLU 1	SER 223
E	VAL 336	VAL 543
F	GLY 335	GLY 546
G	GLY 335	ALA 364

There are 34 helices in PDB entry 5ANM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	32	Right-handed 310
Helix 2	2	A	81	85	Right-handed 310
Helix 3	3	A	126	132	Right-handed alpha
Helix 4	4	A	186	193	Right-handed alpha
Helix 5	5	B	28	32	Right-handed 310
Helix 6	6	B	62	65	Right-handed 310
Helix 7	7	B	74	76	Right-handed 310
Helix 8	8	B	87	91	Right-handed 310
Helix 9	9	B	164	166	Right-handed 310
Helix 10	10	B	195	197	Right-handed 310
Helix 11	11	B	209	211	Right-handed 310
Helix 12	12	C	28	32	Right-handed 310
Helix 13	13	C	81	85	Right-handed 310
Helix 14	14	C	126	132	Right-handed alpha
Helix 15	15	C	186	193	Right-handed alpha
Helix 16	16	D	28	32	Right-handed 310
Helix 17	17	D	62	65	Right-handed 310
Helix 18	18	D	74	76	Right-handed 310
Helix 19	19	D	87	91	Right-handed 310
Helix 20	20	D	164	166	Right-handed 310
Helix 21	21	D	195	197	Right-handed 310
Helix 22	22	D	209	211	Right-handed 310
Helix 23	23	E	406	412	Right-handed alpha
Helix 24	24	E	486	488	Right-handed 310
Helix 25	25	E	512	519	Right-handed alpha
Helix 26	26	F	344	350	Right-handed alpha
Helix 27	27	F	406	412	Right-handed alpha
Helix 28	28	F	486	488	Right-handed 310
Helix 29	29	F	513	517	Right-handed alpha
Helix 30	30	G	344	350	Right-handed alpha
Helix 31	31	G	406	412	Right-handed alpha
Helix 32	32	G	486	488	Right-handed 310
Helix 33	33	G	513	519	Right-handed alpha
Helix 34	34	H	87	91	Right-handed 310

There are 57 sheets in PDB entry 5ANM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, BG, BH, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF, G, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF, GA, GB, GC, GD, GE, GF, HA, HB, HC, HD, HE, HF, HG, HH, LA, LB, LC, LD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	106	109	parallel
Strand 3	A	87	91	anti-parallel
Strand 4	A	36	40	anti-parallel
Strand 5	A	47	50	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	23	first strand
Strand 2	A	72	77	anti-parallel
Strand 3	A	64	68	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	177	184	anti-parallel
Strand 4	A	170	171	parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	177	184	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	177	184	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	196	202	anti-parallel
Strand 4	A	205	211	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	110	111	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	115	119	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	92	98	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	177	178	parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	184	193	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	184	193	parallel

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There are 6 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	218	anti-parallel
Strand 4	D	213	218	anti-parallel
Strand 5	D	203	208	anti-parallel
Strand 6	D	159	162	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	106	110	parallel
Strand 3	C	86	92	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	47	50	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	23	first strand
Strand 2	C	72	77	anti-parallel
Strand 3	C	64	68	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	135	144	anti-parallel
Strand 3	C	177	185	anti-parallel
Strand 4	C	170	171	parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	135	144	anti-parallel
Strand 3	C	177	185	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	177	185	parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	196	202	anti-parallel
Strand 4	C	205	211	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	110	111	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	92	98	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	177	178	parallel

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There are 4 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	143	153	anti-parallel
Strand 3	D	184	193	anti-parallel
Strand 4	D	171	173	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	184	193	parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	355	362	anti-parallel
Strand 3	E	397	404	anti-parallel
Strand 4	E	386	391	anti-parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	371	376	first strand
Strand 2	E	415	421	anti-parallel
Strand 3	E	429	434	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	444	449	first strand
Strand 2	E	460	467	anti-parallel
Strand 3	E	505	511	anti-parallel
Strand 4	E	490	492	anti-parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	483	484	first strand
Strand 2	E	475	480	anti-parallel
Strand 3	E	522	527	anti-parallel
Strand 4	E	536	537	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	483	484	first strand
Strand 2	E	475	480	anti-parallel
Strand 3	E	522	527	anti-parallel
Strand 4	E	540	541	anti-parallel

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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	536	537	first strand
Strand 2	E	522	527	anti-parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	340	first strand
Strand 2	F	355	362	anti-parallel
Strand 3	F	397	404	anti-parallel
Strand 4	F	388	391	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	376	first strand
Strand 2	F	415	421	anti-parallel
Strand 3	F	429	434	anti-parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	444	449	first strand
Strand 2	F	459	469	anti-parallel
Strand 3	F	503	512	anti-parallel
Strand 4	F	496	497	parallel

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There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	444	449	first strand
Strand 2	F	459	469	anti-parallel
Strand 3	F	503	512	anti-parallel
Strand 4	F	490	492	anti-parallel

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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	496	497	first strand
Strand 2	F	503	512	parallel

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There are 4 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	483	484	first strand
Strand 2	F	475	480	anti-parallel
Strand 3	F	522	527	anti-parallel
Strand 4	F	536	541	anti-parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	336	340	first strand
Strand 2	G	355	362	anti-parallel
Strand 3	G	397	404	anti-parallel
Strand 4	G	386	391	anti-parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	371	376	first strand
Strand 2	G	416	421	anti-parallel
Strand 3	G	429	433	anti-parallel

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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	444	449	first strand
Strand 2	G	459	469	anti-parallel
Strand 3	G	503	512	anti-parallel
Strand 4	G	496	497	parallel

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There are 4 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	444	449	first strand
Strand 2	G	459	469	anti-parallel
Strand 3	G	503	512	anti-parallel
Strand 4	G	490	492	anti-parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	496	497	first strand
Strand 2	G	503	512	parallel

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There are 4 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	483	484	first strand
Strand 2	G	475	480	anti-parallel
Strand 3	G	522	527	anti-parallel
Strand 4	G	536	541	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	111	first strand
Strand 2	H	92	98	anti-parallel

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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	130	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	parallel

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There are 4 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	130	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	178	first strand
Strand 2	H	184	193	parallel

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There are 3 strands in HH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	203	208	anti-parallel
Strand 3	H	213	218	anti-parallel

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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	106	109	parallel
Strand 3	L	87	91	anti-parallel
Strand 4	L	36	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	72	78	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	136	142	anti-parallel
Strand 3	L	179	184	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	201	anti-parallel
Strand 4	L	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ANM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ANM