Analysis of interatomic Contacts of Structural Units in PDB entry:
5AO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AO6 entry

There are 2 chains in PDB entry 5AO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 40ALA 507
B
 GLU 40SER 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5AO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 75Right-handed 310
Helix 2
2
A
122 135Right-handed alpha
Helix 3
3
A
218 223Right-handed alpha
Helix 4
4
A
258 268Right-handed alpha
Helix 5
5
A
278 286Right-handed alpha
Helix 6
6
A
402 412Right-handed alpha
Helix 7
7
A
422 432Right-handed alpha
Helix 8
8
B
72 75Right-handed 310
Helix 9
9
B
81 83Right-handed 310
Helix 10
10
B
122 135Right-handed alpha
Helix 11
11
B
218 223Right-handed alpha
Helix 12
12
B
258 268Right-handed alpha
Helix 13
13
B
278 287Right-handed alpha
Helix 14
14
B
402 413Right-handed alpha
Helix 15
15
B
422 432Right-handed alpha
Helix 16
16
B
473 478Right-handed alpha
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There are 16 sheets in PDB entry 5AO6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
46 48anti-parallel
Strand 4
A
158 160anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
92 95anti-parallel
Strand 4
A
108 110anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
196 198anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
225 227anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
248 257anti-parallel
Strand 3
A
355 361anti-parallel
Strand 4
A
272 273anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
295 301anti-parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
346 349anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
392 401anti-parallel
Strand 3
A
500 506anti-parallel
Strand 4
A
416 417anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
A
439 449anti-parallel
Strand 3
A
480 485anti-parallel
Strand 4
A
491 495anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
77 80anti-parallel
Strand 3
B
84 87anti-parallel
Strand 4
B
92 95anti-parallel
Strand 5
B
108 110anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
53 58anti-parallel
Strand 3
B
46 48anti-parallel
Strand 4
B
158 160anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
196 198anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
225 227anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
248 257anti-parallel
Strand 3
B
355 361anti-parallel
Strand 4
B
272 273anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
295 301anti-parallel
Strand 3
B
335 339anti-parallel
Strand 4
B
346 349anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 389first strand
Strand 2
B
392 401anti-parallel
Strand 3
B
500 507anti-parallel
Strand 4
B
416 417anti-parallel
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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 455first strand
Strand 2
B
439 449anti-parallel
Strand 3
B
480 485anti-parallel
Strand 4
B
490 495anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il