Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AOE entry

There are 2 chains in PDB entry 5AOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -16ASP 471
B
 ALA -16ASP 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5AOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 12Right-handed alpha
Helix 2
2
A
16 21Right-handed alpha
Helix 3
3
A
79 84Right-handed alpha
Helix 4
4
A
119 138Right-handed alpha
Helix 5
5
A
157 166Right-handed alpha
Helix 6
6
A
168 177Right-handed alpha
Helix 7
7
A
179 185Right-handed alpha
Helix 8
8
A
209 213Right-handed 310
Helix 9
9
A
219 226Right-handed alpha
Helix 10
10
A
258 268Right-handed alpha
Helix 11
11
A
278 284Right-handed alpha
Helix 12
12
A
309 317Right-handed alpha
Helix 13
13
B
-1 12Right-handed alpha
Helix 14
14
B
16 21Right-handed alpha
Helix 15
15
B
79 84Right-handed alpha
Helix 16
16
B
107 111Right-handed alpha
Helix 17
17
B
119 138Right-handed alpha
Helix 18
18
B
157 166Right-handed alpha
Helix 19
19
B
168 177Right-handed alpha
Helix 20
20
B
179 185Right-handed alpha
Helix 21
21
B
209 213Right-handed 310
Helix 22
22
B
219 226Right-handed alpha
Helix 23
23
B
258 269Right-handed alpha
Helix 24
24
B
277 283Right-handed alpha
Helix 25
25
B
309 317Right-handed alpha
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There are 23 sheets in PDB entry 5AOE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
344 359parallel
Strand 3
A
42 57anti-parallel
Strand 4
A
35 38anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
285 292parallel
Strand 5
A
300 305parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
189 204anti-parallel
Strand 5
A
147 154anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
234 252parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
75 77parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
97 102parallel
Strand 3
A
189 204anti-parallel
Strand 4
A
234 252anti-parallel
Strand 5
A
285 292parallel
Strand 6
A
300 305parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
189 204anti-parallel
Strand 5
A
97 102anti-parallel
Strand 6
A
112 115parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
97 102parallel
Strand 3
A
189 204anti-parallel
Strand 4
A
147 154anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 414first strand
Strand 2
A
361 367anti-parallel
Strand 3
A
450 457parallel
Strand 4
A
462 469anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 396first strand
Strand 2
A
372 384anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
372 384anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 442first strand
Strand 2
A
418 428anti-parallel
Strand 3
A
372 384anti-parallel
Strand 4
A
390 396anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 442first strand
Strand 2
A
418 428anti-parallel
Strand 3
A
372 384anti-parallel
Strand 4
A
404 405anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
344 359parallel
Strand 3
B
42 57anti-parallel
Strand 4
B
35 38anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
327 335anti-parallel
Strand 3
B
234 252anti-parallel
Strand 4
B
285 292parallel
Strand 5
B
300 301parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
327 335anti-parallel
Strand 3
B
234 252anti-parallel
Strand 4
B
189 204anti-parallel
Strand 5
B
147 154anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
234 252parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
327 335anti-parallel
Strand 3
B
234 252anti-parallel
Strand 4
B
75 77parallel
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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
97 102parallel
Strand 3
B
189 204anti-parallel
Strand 4
B
234 252anti-parallel
Strand 5
B
285 292parallel
Strand 6
B
300 301parallel
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There are 6 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
327 335anti-parallel
Strand 3
B
234 252anti-parallel
Strand 4
B
189 204anti-parallel
Strand 5
B
97 102anti-parallel
Strand 6
B
112 115parallel
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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
97 102parallel
Strand 3
B
189 204anti-parallel
Strand 4
B
147 154anti-parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 414first strand
Strand 2
B
361 367anti-parallel
Strand 3
B
450 457parallel
Strand 4
B
462 469anti-parallel
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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 396first strand
Strand 2
B
373 384anti-parallel
Strand 3
B
418 428anti-parallel
Strand 4
B
436 445anti-parallel
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