Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AOO entry

There are 3 chains in PDB entry 5AOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1PRO 233
B
 ASN 13GLN 370
C
 HIS 1LEU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5AOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
42 47Right-handed alpha
Helix 3
3
A
76 81Right-handed alpha
Helix 4
4
A
88 94Right-handed alpha
Helix 5
5
A
135 140Right-handed alpha
Helix 6
6
B
167 171Right-handed 310
Helix 7
7
B
212 217Right-handed alpha
Helix 8
8
B
228 235Right-handed alpha
Helix 9
9
B
238 245Right-handed alpha
Helix 10
10
B
279 288Right-handed alpha
Helix 11
11
B
289 294Right-handed 310
Helix 12
12
C
44 50Right-handed alpha
Helix 13
13
C
84 92Right-handed alpha
Helix 14
14
C
130 135Right-handed alpha
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There are 19 sheets in PDB entry 5AOO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, CA, CB, AE, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, CC, CD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
C
149 154anti-parallel
Strand 3
C
100 106anti-parallel
Strand 4
C
197 206anti-parallel
Strand 5
C
53 60anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
211 228parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
211 228anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
96 110anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
A
154 161parallel
Strand 3
A
96 110anti-parallel
Strand 4
A
170 171anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
A
154 161parallel
Strand 3
A
96 110anti-parallel
Strand 4
A
211 228anti-parallel
Strand 5
C
40 41parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
117 124anti-parallel
Strand 4
A
143 149anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
C
30 31parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
156 157anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
136 140anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
306 311parallel
Strand 3
B
247 259anti-parallel
Strand 4
B
320 321anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
306 311parallel
Strand 3
B
247 259anti-parallel
Strand 4
B
347 364anti-parallel
Strand 5
B
175 183anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
247 259anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
328 339anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
328 339parallel
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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 300first strand
Strand 2
B
267 276anti-parallel
Strand 3
B
328 339anti-parallel
Strand 4
B
225 227parallel
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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 300first strand
Strand 2
B
267 276anti-parallel
Strand 3
B
328 339anti-parallel
Strand 4
B
191 192anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 73first strand
Strand 2
C
178 189anti-parallel
Strand 3
C
113 122anti-parallel
Strand 4
C
138 143anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 164first strand
Strand 2
C
93 97anti-parallel
Strand 3
C
211 215anti-parallel
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