Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AOQ entry

There are 4 chains in PDB entry 5AOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4PRO 249
B
 VAL 4PRO 249
L
 PRO 9GLN 98
M
 ALA 4TRP 80
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5AOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
18 31Right-handed alpha
Helix 3
3
A
239 245Right-handed alpha
Helix 4
4
B
11 16Right-handed alpha
Helix 5
5
B
18 28Right-handed alpha
Helix 6
6
B
35 39Right-handed 310
Helix 7
7
B
239 245Right-handed alpha
Helix 8
8
M
73 77Right-handed 310
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There are 12 sheets in PDB entry 5AOQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, LA, LB, MA, MB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
126 132parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
75 80anti-parallel
Strand 5
A
90 93anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
99 103anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 159first strand
Strand 2
A
163 171anti-parallel
Strand 3
A
204 210anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 197first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
225 232anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
126 132parallel
Strand 3
B
110 116anti-parallel
Strand 4
B
75 80anti-parallel
Strand 5
B
90 93anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
99 103anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 159first strand
Strand 2
B
163 171anti-parallel
Strand 3
B
204 210anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 197first strand
Strand 2
B
181 187anti-parallel
Strand 3
B
215 222anti-parallel
Strand 4
B
225 232anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
15 19first strand
Strand 2
L
30 34anti-parallel
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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
50 61first strand
Strand 2
L
80 92anti-parallel
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There are 2 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
15 19first strand
Strand 2
M
30 34anti-parallel
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There are 2 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
50 60first strand
Strand 2
M
81 92anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il