Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AOR entry

There are 2 chains in PDB entry 5AOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 119	ARG 1158
B	SER 138	GLN 416

There are101 helices in PDB entry 5AOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	146	155	Right-handed alpha
Helix 2	2	A	158	162	Right-handed 310
Helix 3	3	A	166	181	Right-handed alpha
Helix 4	4	A	194	198	Right-handed 310
Helix 5	5	A	209	212	Right-handed 310
Helix 6	6	A	223	242	Right-handed alpha
Helix 7	7	A	268	282	Right-handed alpha
Helix 8	8	A	288	292	Right-handed 310
Helix 9	9	A	352	371	Right-handed alpha
Helix 10	10	A	371	383	Right-handed alpha
Helix 11	11	A	384	388	Right-handed 310
Helix 12	12	A	389	400	Right-handed alpha
Helix 13	13	A	412	428	Right-handed alpha
Helix 14	14	A	430	433	Right-handed 310
Helix 15	15	A	442	457	Right-handed alpha
Helix 16	16	A	487	494	Right-handed alpha
Helix 17	17	A	495	497	Right-handed 310
Helix 18	18	A	509	512	Right-handed 310
Helix 19	19	A	513	530	Right-handed alpha
Helix 20	20	A	543	551	Right-handed alpha
Helix 21	21	A	570	579	Right-handed alpha
Helix 22	22	A	583	601	Right-handed alpha
Helix 23	23	A	605	609	Right-handed 310
Helix 24	24	A	610	614	Right-handed 310
Helix 25	25	A	620	630	Right-handed alpha
Helix 26	26	A	636	650	Right-handed alpha
Helix 27	27	A	662	675	Right-handed alpha
Helix 28	28	A	695	701	Right-handed alpha
Helix 29	29	A	718	721	Right-handed 310
Helix 30	30	A	758	767	Right-handed alpha
Helix 31	31	A	782	789	Right-handed alpha
Helix 32	32	A	795	800	Right-handed 310
Helix 33	33	A	802	812	Right-handed alpha
Helix 34	34	A	816	823	Right-handed alpha
Helix 35	35	A	829	843	Right-handed alpha
Helix 36	36	A	853	861	Right-handed alpha
Helix 37	37	A	865	878	Right-handed alpha
Helix 38	38	A	880	891	Right-handed alpha
Helix 39	39	A	908	913	Right-handed alpha
Helix 40	40	A	914	916	Right-handed 310
Helix 41	41	A	920	938	Right-handed alpha
Helix 42	42	A	939	951	Right-handed alpha
Helix 43	43	A	953	974	Right-handed alpha
Helix 44	44	A	977	982	Right-handed 310
Helix 45	45	A	994	1008	Right-handed alpha
Helix 46	46	A	1024	1026	Right-handed 310
Helix 47	47	A	1070	1078	Right-handed alpha
Helix 48	48	A	1086	1088	Right-handed 310
Helix 49	49	A	1101	1125	Right-handed alpha
Helix 50	50	A	1126	1129	Right-handed 310
Helix 51	51	A	1133	1148	Right-handed alpha
Helix 52	52	B	138	155	Right-handed alpha
Helix 53	53	B	158	162	Right-handed 310
Helix 54	54	B	166	181	Right-handed alpha
Helix 55	55	B	194	198	Right-handed 310
Helix 56	56	B	209	212	Right-handed 310
Helix 57	57	B	223	242	Right-handed alpha
Helix 58	58	B	268	283	Right-handed alpha
Helix 59	59	B	288	292	Right-handed 310
Helix 60	60	B	352	371	Right-handed alpha
Helix 61	61	B	371	383	Right-handed alpha
Helix 62	62	B	384	388	Right-handed 310
Helix 63	63	B	389	400	Right-handed alpha
Helix 64	64	B	412	427	Right-handed alpha
Helix 65	65	B	430	433	Right-handed 310
Helix 66	66	B	442	457	Right-handed alpha
Helix 67	67	B	487	494	Right-handed alpha
Helix 68	68	B	495	497	Right-handed 310
Helix 69	69	B	509	512	Right-handed 310
Helix 70	70	B	513	530	Right-handed alpha
Helix 71	71	B	543	551	Right-handed alpha
Helix 72	72	B	570	579	Right-handed alpha
Helix 73	73	B	583	601	Right-handed alpha
Helix 74	74	B	605	609	Right-handed 310
Helix 75	75	B	610	614	Right-handed 310
Helix 76	76	B	620	630	Right-handed alpha
Helix 77	77	B	636	650	Right-handed alpha
Helix 78	78	B	662	675	Right-handed alpha
Helix 79	79	B	695	701	Right-handed alpha
Helix 80	80	B	718	721	Right-handed 310
Helix 81	81	B	758	767	Right-handed alpha
Helix 82	82	B	782	789	Right-handed alpha
Helix 83	83	B	795	800	Right-handed 310
Helix 84	84	B	802	812	Right-handed alpha
Helix 85	85	B	816	823	Right-handed alpha
Helix 86	86	B	829	843	Right-handed alpha
Helix 87	87	B	853	861	Right-handed alpha
Helix 88	88	B	865	878	Right-handed alpha
Helix 89	89	B	880	891	Right-handed alpha
Helix 90	90	B	908	913	Right-handed alpha
Helix 91	91	B	914	916	Right-handed 310
Helix 92	92	B	920	938	Right-handed alpha
Helix 93	93	B	939	951	Right-handed alpha
Helix 94	94	B	953	974	Right-handed alpha
Helix 95	95	B	977	982	Right-handed 310
Helix 96	96	B	994	1008	Right-handed alpha
Helix 97	97	B	1070	1078	Right-handed alpha
Helix 98	98	B	1086	1088	Right-handed 310
Helix 99	99	B	1101	1125	Right-handed alpha
Helix 100	100	B	1126	1129	Right-handed 310
Helix 101	101	B	1133	1148	Right-handed alpha

There are 13 sheets in PDB entry 5AOR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	192	first strand
Strand 2	A	199	208	anti-parallel
Strand 3	A	213	221	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	1096	1099	parallel
Strand 3	A	1090	1092	anti-parallel
Strand 4	A	1082	1084	anti-parallel
Strand 5	A	301	302	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	341	342	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	465	469	anti-parallel
Strand 3	A	481	486	parallel
Strand 4	A	435	440	parallel
Strand 5	A	503	507	parallel
Strand 6	A	534	539	parallel
Strand 7	A	402	407	parallel
Strand 8	A	556	559	parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	569	first strand
Strand 2	A	775	779	parallel
Strand 3	A	729	734	parallel
Strand 4	A	655	659	parallel
Strand 5	A	711	716	parallel
Strand 6	A	685	690	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	744	first strand
Strand 2	A	749	756	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1012	1017	first strand
Strand 2	A	1049	1057	anti-parallel
Strand 3	A	1061	1069	anti-parallel
Strand 4	A	1027	1031	parallel
Strand 5	A	1020	1023	anti-parallel
Strand 6	A	1012	1017	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	199	208	anti-parallel
Strand 3	B	213	221	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	1096	1099	parallel
Strand 3	B	1090	1092	anti-parallel
Strand 4	B	1082	1084	anti-parallel
Strand 5	B	301	302	anti-parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	465	469	anti-parallel
Strand 3	B	481	486	parallel
Strand 4	B	435	440	parallel
Strand 5	B	503	507	parallel
Strand 6	B	534	539	parallel
Strand 7	B	402	407	parallel
Strand 8	B	556	559	parallel

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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	569	first strand
Strand 2	B	775	779	parallel
Strand 3	B	729	734	parallel
Strand 4	B	655	659	parallel
Strand 5	B	711	716	parallel
Strand 6	B	685	690	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	744	first strand
Strand 2	B	749	756	anti-parallel

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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1012	1017	first strand
Strand 2	B	1049	1057	anti-parallel
Strand 3	B	1061	1069	anti-parallel
Strand 4	B	1027	1031	parallel
Strand 5	B	1020	1023	anti-parallel
Strand 6	B	1012	1017	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOR