Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AOV entry

There is 1 chain in PDB entry 5AOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5AOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
35 43Right-handed alpha
Helix 3
3
A
44 46Right-handed 310
Helix 4
4
A
58 64Right-handed alpha
Helix 5
5
A
82 89Right-handed alpha
Helix 6
6
A
100 118Right-handed alpha
Helix 7
7
A
118 128Right-handed alpha
Helix 8
8
A
129 135Right-handed alpha
Helix 9
9
A
159 171Right-handed alpha
Helix 10
10
A
184 192Right-handed alpha
Helix 11
11
A
197 205Right-handed alpha
Helix 12
12
A
223 230Right-handed alpha
Helix 13
13
A
241 244Right-handed 310
Helix 14
14
A
246 256Right-handed alpha
Helix 15
15
A
274 279Right-handed alpha
Helix 16
16
A
293 313Right-handed alpha
Helix 17
17
A
324 329Right-handed alpha
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There are 2 sheets in PDB entry 5AOV. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
4 7parallel
Strand 3
A
48 51parallel
Strand 4
A
70 73parallel
Strand 5
A
92 94parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
175 179parallel
Strand 3
A
152 156parallel
Strand 4
A
207 210parallel
Strand 5
A
235 238parallel
Strand 6
A
261 264parallel
Strand 7
A
283 285parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il