Analysis of interatomic Contacts of Structural Units in PDB entry:
5AP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AP8 entry

There are 3 chains in PDB entry 5AP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 160
B
 MET 1LYS 166
C
 MET 1LYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5AP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 24Right-handed alpha
Helix 2
2
A
50 57Right-handed alpha
Helix 3
3
A
70 74Right-handed 310
Helix 4
4
A
102 114Right-handed alpha
Helix 5
5
A
116 123Right-handed alpha
Helix 6
6
A
124 126Right-handed 310
Helix 7
7
A
129 137Right-handed alpha
Helix 8
8
A
137 145Right-handed alpha
Helix 9
9
A
148 160Right-handed alpha
Helix 10
10
B
18 24Right-handed alpha
Helix 11
11
B
47 49Right-handed 310
Helix 12
12
B
50 57Right-handed alpha
Helix 13
13
B
70 74Right-handed 310
Helix 14
14
B
102 114Right-handed alpha
Helix 15
15
B
116 125Right-handed alpha
Helix 16
16
B
129 137Right-handed alpha
Helix 17
17
B
137 145Right-handed alpha
Helix 18
18
B
148 165Right-handed alpha
Helix 19
19
C
19 23Right-handed 310
Helix 20
20
C
47 49Right-handed 310
Helix 21
21
C
50 57Right-handed alpha
Helix 22
22
C
70 75Right-handed 310
Helix 23
23
C
102 114Right-handed alpha
Helix 24
24
C
116 125Right-handed alpha
Helix 25
25
C
129 145Right-handed alpha
Helix 26
26
C
148 166Right-handed alpha
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There are 3 sheets in PDB entry 5AP8. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
3 6parallel
Strand 3
A
59 62parallel
Strand 4
A
36 38parallel
Strand 5
A
80 82parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
3 6parallel
Strand 3
B
59 61parallel
Strand 4
B
36 38parallel
Strand 5
B
80 82parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
3 6parallel
Strand 3
C
59 62parallel
Strand 4
C
36 38parallel
Strand 5
C
80 82parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il