Analysis of interatomic Contacts of Structural Units in PDB entry:
5APA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5APA entry

There is 1 chain in PDB entry 5APA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 563ILE 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 5APA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
577 582Right-handed alpha
Helix 2
2
A
583 593Right-handed alpha
Helix 3
3
A
593 605Right-handed alpha
Helix 4
4
A
637 644Right-handed alpha
Helix 5
5
A
644 652Right-handed alpha
Helix 6
6
A
654 659Right-handed alpha
Helix 7
7
A
748 755Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5APA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
716 719anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
735 743anti-parallel
Strand 5
A
664 670anti-parallel
Strand 6
A
625 632anti-parallel
Strand 7
A
635 636parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
716 719anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
735 743anti-parallel
Strand 5
A
664 670anti-parallel
Strand 6
A
625 632anti-parallel
Strand 7
A
613 614anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 636first strand
Strand 2
A
625 632parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 622first strand
Strand 2
A
674 679anti-parallel
Strand 3
A
725 729anti-parallel
Strand 4
A
700 704anti-parallel
Strand 5
A
707 709anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il