Analysis of interatomic Contacts of Structural Units in PDB entry:
5APG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5APG entry

There are 3 chains in PDB entry 5APG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 184
B
 MSE 1GLY 184
C
 MSE 1GLY 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5APG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed alpha
Helix 2
2
A
34 38Right-handed 310
Helix 3
3
A
54 56Right-handed 310
Helix 4
4
A
57 64Right-handed alpha
Helix 5
5
A
72 84Right-handed alpha
Helix 6
6
A
111 123Right-handed alpha
Helix 7
7
A
125 134Right-handed alpha
Helix 8
8
A
140 154Right-handed alpha
Helix 9
9
A
159 166Right-handed alpha
Helix 10
10
A
169 183Right-handed alpha
Helix 11
11
B
14 17Right-handed 310
Helix 12
12
B
18 26Right-handed alpha
Helix 13
13
B
34 38Right-handed 310
Helix 14
14
B
54 56Right-handed 310
Helix 15
15
B
57 64Right-handed alpha
Helix 16
16
B
72 84Right-handed alpha
Helix 17
17
B
111 123Right-handed alpha
Helix 18
18
B
125 134Right-handed alpha
Helix 19
19
B
139 146Right-handed alpha
Helix 20
20
B
146 154Right-handed alpha
Helix 21
21
B
159 166Right-handed alpha
Helix 22
22
B
169 183Right-handed alpha
Helix 23
23
C
18 26Right-handed alpha
Helix 24
24
C
34 38Right-handed 310
Helix 25
25
C
54 56Right-handed 310
Helix 26
26
C
57 64Right-handed alpha
Helix 27
27
C
72 84Right-handed alpha
Helix 28
28
C
111 123Right-handed alpha
Helix 29
29
C
125 134Right-handed alpha
Helix 30
30
C
138 146Right-handed alpha
Helix 31
31
C
146 154Right-handed alpha
Helix 32
32
C
159 166Right-handed alpha
Helix 33
33
C
169 183Right-handed alpha
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There are 3 sheets in PDB entry 5APG. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
5 9parallel
Strand 3
A
66 70parallel
Strand 4
A
43 45parallel
Strand 5
A
89 91parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
5 9parallel
Strand 3
B
66 70parallel
Strand 4
B
43 45parallel
Strand 5
B
89 91parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
5 9parallel
Strand 3
C
66 70parallel
Strand 4
C
43 45parallel
Strand 5
C
89 91parallel
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