Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQ1 entry

There are 3 chains in PDB entry 5AQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 62THR 545
B
 PRO 62THR 545
C
 PRO 62ALA 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 5AQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 84Right-handed alpha
Helix 2
2
A
84 95Right-handed alpha
Helix 3
3
A
114 122Right-handed alpha
Helix 4
4
A
123 127Right-handed 310
Helix 5
5
A
136 142Right-handed alpha
Helix 6
6
A
153 171Right-handed alpha
Helix 7
7
A
187 189Right-handed 310
Helix 8
8
A
190 202Right-handed alpha
Helix 9
9
A
205 209Right-handed 310
Helix 10
10
A
222 234Right-handed alpha
Helix 11
11
A
238 240Right-handed 310
Helix 12
12
A
246 250Right-handed 310
Helix 13
13
A
251 256Right-handed alpha
Helix 14
14
A
256 263Right-handed alpha
Helix 15
15
A
264 269Right-handed alpha
Helix 16
16
A
299 305Right-handed alpha
Helix 17
17
A
308 319Right-handed alpha
Helix 18
18
A
326 339Right-handed alpha
Helix 19
19
A
345 347Right-handed 310
Helix 20
20
A
364 368Right-handed 310
Helix 21
21
A
423 427Right-handed 310
Helix 22
22
A
466 470Right-handed alpha
Helix 23
23
A
476 488Right-handed alpha
Helix 24
24
A
495 515Right-handed alpha
Helix 25
25
A
530 541Right-handed alpha
Helix 26
26
B
78 84Right-handed alpha
Helix 27
27
B
84 95Right-handed alpha
Helix 28
28
B
114 122Right-handed alpha
Helix 29
29
B
123 127Right-handed 310
Helix 30
30
B
136 142Right-handed alpha
Helix 31
31
B
153 171Right-handed alpha
Helix 32
32
B
187 189Right-handed 310
Helix 33
33
B
190 202Right-handed alpha
Helix 34
34
B
205 209Right-handed 310
Helix 35
35
B
222 234Right-handed alpha
Helix 36
36
B
238 240Right-handed 310
Helix 37
37
B
246 250Right-handed 310
Helix 38
38
B
251 256Right-handed alpha
Helix 39
39
B
256 263Right-handed alpha
Helix 40
40
B
264 269Right-handed alpha
Helix 41
41
B
299 305Right-handed alpha
Helix 42
42
B
308 319Right-handed alpha
Helix 43
43
B
326 339Right-handed alpha
Helix 44
44
B
345 347Right-handed 310
Helix 45
45
B
364 368Right-handed 310
Helix 46
46
B
423 427Right-handed 310
Helix 47
47
B
466 470Right-handed alpha
Helix 48
48
B
476 488Right-handed alpha
Helix 49
49
B
495 516Right-handed alpha
Helix 50
50
B
530 541Right-handed alpha
Helix 51
51
C
78 84Right-handed alpha
Helix 52
52
C
84 95Right-handed alpha
Helix 53
53
C
114 122Right-handed alpha
Helix 54
54
C
123 127Right-handed 310
Helix 55
55
C
136 142Right-handed alpha
Helix 56
56
C
153 171Right-handed alpha
Helix 57
57
C
187 189Right-handed 310
Helix 58
58
C
190 202Right-handed alpha
Helix 59
59
C
205 209Right-handed 310
Helix 60
60
C
222 234Right-handed alpha
Helix 61
61
C
238 240Right-handed 310
Helix 62
62
C
246 250Right-handed 310
Helix 63
63
C
251 256Right-handed alpha
Helix 64
64
C
256 263Right-handed alpha
Helix 65
65
C
264 269Right-handed alpha
Helix 66
66
C
299 305Right-handed alpha
Helix 67
67
C
308 319Right-handed alpha
Helix 68
68
C
326 339Right-handed alpha
Helix 69
69
C
345 347Right-handed 310
Helix 70
70
C
364 368Right-handed 310
Helix 71
71
C
423 427Right-handed 310
Helix 72
72
C
466 470Right-handed alpha
Helix 73
73
C
476 488Right-handed alpha
Helix 74
74
C
495 515Right-handed alpha
Helix 75
75
C
530 541Right-handed alpha
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There are 6 sheets in PDB entry 5AQ1. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
103 108parallel
Strand 3
A
69 74parallel
Strand 4
A
179 184parallel
Strand 5
A
211 215parallel
Strand 6
A
242 244parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 465first strand
Strand 2
A
441 449anti-parallel
Strand 3
A
431 437anti-parallel
Strand 4
A
409 416anti-parallel
Strand 5
A
276 284anti-parallel
Strand 6
A
397 402parallel
Strand 7
A
380 385anti-parallel
Strand 8
A
349 355anti-parallel
Strand 9
A
520 524parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
103 108parallel
Strand 3
B
69 74parallel
Strand 4
B
179 184parallel
Strand 5
B
211 215parallel
Strand 6
B
242 244parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 465first strand
Strand 2
B
441 449anti-parallel
Strand 3
B
431 437anti-parallel
Strand 4
B
409 416anti-parallel
Strand 5
B
276 284anti-parallel
Strand 6
B
397 402parallel
Strand 7
B
380 385anti-parallel
Strand 8
B
349 355anti-parallel
Strand 9
B
520 524parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 148first strand
Strand 2
C
103 108parallel
Strand 3
C
69 74parallel
Strand 4
C
179 184parallel
Strand 5
C
211 215parallel
Strand 6
C
242 244parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 465first strand
Strand 2
C
441 449anti-parallel
Strand 3
C
431 437anti-parallel
Strand 4
C
409 416anti-parallel
Strand 5
C
276 284anti-parallel
Strand 6
C
397 402parallel
Strand 7
C
380 385anti-parallel
Strand 8
C
349 355anti-parallel
Strand 9
C
520 524parallel
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