Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQ8 entry

There is 1 chain in PDB entry 5AQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11TRP 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5AQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
26 36Right-handed alpha
Helix 3
3
A
49 58Right-handed alpha
Helix 4
4
A
59 68Right-handed alpha
Helix 5
5
A
82 90Right-handed alpha
Helix 6
6
A
92 102Right-handed alpha
Helix 7
7
A
115 124Right-handed alpha
Helix 8
8
A
125 135Right-handed alpha
Helix 9
9
A
148 156Right-handed alpha
Helix 10
10
A
158 179Right-handed alpha
Helix 11
11
A
207 209Right-handed 310
Helix 12
12
A
210 224Right-handed alpha
Helix 13
13
A
236 240Right-handed 310
Helix 14
14
A
246 250Right-handed 310
Helix 15
15
A
257 267Right-handed alpha
Helix 16
16
A
269 280Right-handed alpha
Helix 17
17
A
282 294Right-handed alpha
Helix 18
18
A
305 309Right-handed 310
Helix 19
19
A
320 334Right-handed alpha
Helix 20
20
A
338 351Right-handed alpha
Helix 21
21
A
358 362Right-handed 310
Helix 22
22
A
407 425Right-handed alpha
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There are 3 sheets in PDB entry 5AQ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
181 188anti-parallel
Strand 3
A
395 402anti-parallel
Strand 4
A
380 388anti-parallel
Strand 5
A
368 376anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
318 319anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
255 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il